RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TRIM67Q6ZTA4 783 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 CHST15Q7LFX5 561 aaPredicted RBP12.58□□□□□ -0.4
LDLR-205ENST00000557933 APLFQ8IW19 511 aaPredicted RBP12.58□□□□□ -0.4
LDLR-205ENST00000557933 DENND6AQ8IWF6 608 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 KYQ8NBH2 561 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 NLRP7Q8WX94 980 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 DGCR14Q96DF8 476 aaKnown RBP12.58□□□□□ -0.4
LDLR-205ENST00000557933 KLRG1Q96E93 195 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 ZMAT2Q96NC0 199 aaKnown RBP12.58□□□□□ -0.4
LDLR-205ENST00000557933 FTHL17Q9BXU8 183 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 SENP6Q9GZR1 1112 aaPredicted RBP12.58□□□□□ -0.4
LDLR-205ENST00000557933 TRPV6Q9H1D0 765 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 GTSE1Q9NYZ3 720 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 CCDC167Q9P0B6 97 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 GIMAP2Q9UG22 337 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 PSMD13Q9UNM6 376 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 ZNF711Q9Y462 761 aa12.58□□□□□ -0.4
LDLR-205ENST00000557933 A0A0A0MRY4 1105 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 C9IYK1 514 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 NRP1O14786 923 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 STAMBPO95630 424 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 TSHRP16473 764 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 MX2P20592 715 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 RPL5P46777 297 aaKnown RBP12.57□□□□□ -0.4
LDLR-205ENST00000557933 PSMD7P51665 324 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 GJA9P57773 515 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 PDK2Q15119 407 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 FBXO48Q5FWF7 155 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 RARS2Q5T160 578 aaKnown RBP12.57□□□□□ -0.4
LDLR-205ENST00000557933 OGFRL1Q5TC84 451 aaPredicted RBP12.57□□□□□ -0.4
LDLR-205ENST00000557933 IER5Q5VY09 327 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 EPGNQ6UW88 154 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 HFE2Q6ZVN8 426 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 NCSTNQ92542 709 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 SPATA13Q96N96 652 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 KCNK16Q96T55 309 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 SLC29A1Q99808 456 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 FAM49AQ9H0Q0 323 aaPredicted RBP12.57□□□□□ -0.4
LDLR-205ENST00000557933 NMRAL1Q9HBL8 299 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 DCDC2Q9UHG0 476 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 GJD2Q9UKL4 321 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 COL11A1P12107 1806 aaPredicted RBP12.57□□□□□ -0.4
LDLR-205ENST00000557933 AP3M2P53677 418 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 POU5F1BQ06416 359 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 IFRD2Q12894 506 aaPredicted RBP12.57□□□□□ -0.4
LDLR-205ENST00000557933 CYLC2Q14093 348 aaPredicted RBP12.57□□□□□ -0.4
LDLR-205ENST00000557933 GRM3Q14832 879 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 TBCCQ15814 346 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 GPR162Q16538 588 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 KIZQ2M2Z5 673 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 ANKDD1AQ495B1 522 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 KCTD21Q4G0X4 260 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 SH3D19Q5HYK7 790 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 SYPL2Q5VXT5 272 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 FAM160B1Q5W0V3 765 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 ITPRIPL1Q6GPH6 555 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 TRIM74Q86UV6 250 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 TRIM73Q86UV7 250 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 NT5DC4Q86YG4 428 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 SLC41A1Q8IVJ1 513 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 DEFB106AQ8N104 65 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 TRIML2Q8N7C3 387 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 NAT16Q8N8M0 369 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 CXorf38Q8TB03 319 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 SLC2A14Q8TDB8 520 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 SOX17Q9H6I2 414 aaPredicted RBP12.57□□□□□ -0.4
LDLR-205ENST00000557933 COQ10BQ9H8M1 238 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 DOLKQ9UPQ8 538 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 PHF24Q9UPV7 400 aa12.57□□□□□ -0.4
LDLR-205ENST00000557933 ZNF638Q14966 1978 aaKnown RBP12.56□□□□□ -0.4
LDLR-205ENST00000557933 SAC3D1A6NKF1 404 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 PDLIM1O00151 329 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 GCATO75600 419 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 HNRNPCP07910 306 aaKnown RBP eCLIP12.56□□□□□ -0.41e-7■■■□□ 17.1
LDLR-205ENST00000557933 GNAO1P09471 354 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 TFEBP19484 476 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 NMBRP28336 390 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 GP5P40197 560 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 SULT1E1P49888 294 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 SEMA5AQ13591 1074 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 GRM2Q14416 872 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 B3GNT6Q6ZMB0 384 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 URGCPQ8TCY9 931 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 EXT2Q93063 718 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 DCPSQ96C86 337 aaKnown RBP12.56□□□□□ -0.4
LDLR-205ENST00000557933 CCT7Q99832 543 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 ACE2Q9BYF1 805 aaPredicted RBP12.56□□□□□ -0.4
LDLR-205ENST00000557933 TNFRSF12AQ9NP84 129 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 ZDHHC7Q9NXF8 308 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 SNTG2Q9NY99 539 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 A0A0J9YVX5 310 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 C19orf81C9J6K1 198 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 BOLA2-SMG1P6H3BVE0 249 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 CCL22O00626 93 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 BEST1O76090 585 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 POLBP06746 335 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 FUT4P22083 530 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 ARL4AP40617 200 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 YBX1P67809 324 aaKnown RBP12.56□□□□□ -0.4
LDLR-205ENST00000557933 HPCAP84074 193 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms