RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 NAPEPLDQ6IQ20 393 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 RFWD3Q6PCD5 774 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 CAPN12Q6ZSI9 719 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 GAREM2Q75VX8 874 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 LINC00523Q86TU6 105 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 IGDCC3Q8IVU1 814 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 CNTD1Q8N815 330 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 ARL14EPQ8N8R7 260 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-233ENST00000557529 FBF1Q8TES7 1133 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 USP33Q8TEY7 942 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 STAMBPL1Q96FJ0 436 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 TGS1Q96RS0 853 aaKnown RBP12.74□□□□□ -0.37
SHMT2-233ENST00000557529 MAGEH1Q9H213 219 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 CNOT10Q9H9A5 744 aaKnown RBP12.74□□□□□ -0.37
SHMT2-233ENST00000557529 RBM22Q9NW64 420 aaKnown RBP eCLIP12.74□□□□□ -0.374e-10■■■■■ 40.7
SHMT2-233ENST00000557529 SMPD4Q9NXE4 827 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 DPP7Q9UHL4 492 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 RABGEF1Q9UJ41 708 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 LSM7Q9UK45 103 aaKnown RBP12.74□□□□□ -0.37
SHMT2-233ENST00000557529 ZNF510Q9Y2H8 683 aa12.74□□□□□ -0.37
SHMT2-233ENST00000557529 ZFP37Q9Y6Q3 630 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-233ENST00000557529 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-233ENST00000557529 TRAV19A0A0A6YYK7 116 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 PEX11BO96011 259 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 MYL4P12829 197 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 HPDP32754 393 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-233ENST00000557529 ETFBP38117 255 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 GRIA1P42261 906 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 GEMP55040 296 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 TNK2Q07912 1038 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 ZNF177Q13360 481 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-233ENST00000557529 MTM1Q13496 603 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 SERINC3Q13530 473 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 MARC1Q5VT66 337 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 ELMSAN1Q6PJG2 1045 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 SETD3Q86TU7 594 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-233ENST00000557529 CIR1Q86X95 450 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-233ENST00000557529 ZNF354CQ86Y25 554 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 HS6ST3Q8IZP7 471 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 AGGF1Q8N302 714 aaeCLIP12.73□□□□□ -0.37
SHMT2-233ENST00000557529 LEMD2Q8NC56 503 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 CFAP36Q96G28 342 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 ZFRQ96KR1 1074 aaKnown RBP12.73□□□□□ -0.37
SHMT2-233ENST00000557529 ZNF599Q96NL3 588 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 XPO6Q96QU8 1125 aaKnown RBP12.73□□□□□ -0.37
SHMT2-233ENST00000557529 GORASP1Q9BQQ3 440 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 CORO1BQ9BR76 489 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 MLPHQ9BV36 600 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-233ENST00000557529 ATXN3LQ9H3M9 355 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 CASS4Q9NQ75 786 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 HAUS2Q9NVX0 235 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 EURLQ9NYK6 297 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 BFARQ9NZS9 450 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 PCDHA11Q9Y5I1 949 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 CPQQ9Y646 472 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 MAD1L1Q9Y6D9 718 aa12.73□□□□□ -0.37
SHMT2-233ENST00000557529 A0A1B0GVM2 712 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 TCRBV9S1A1TA0A576 114 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 ILVBLA1L0T0 632 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 TYW5A2RUC4 315 aaKnown RBP12.72□□□□□ -0.37
SHMT2-233ENST00000557529 TCAF2A6NFQ2 919 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 SOBPA7XYQ1 873 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 POC1B-GALNT4F8VUJ3 575 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 H3BNC9 293 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 GRM6O15303 877 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 CCL16O15467 120 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 PRAMEF11O60813 436 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 HLA-DQB2P05538 268 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 CKMP06732 381 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 CA3P07451 260 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 HNRNPA1P09651 372 aaKnown RBP eCLIP12.72□□□□□ -0.37
SHMT2-233ENST00000557529 PTPN2P17706 415 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 PGAM1P18669 254 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 DDX6P26196 483 aaKnown RBP eCLIP12.72□□□□□ -0.373e-6■□□□□ 9.6
SHMT2-233ENST00000557529 MSH2P43246 934 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 NPY2RP49146 381 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 EPHA5P54756 1037 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 ERVK-21P61565 698 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 CYP4F8P98187 520 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 GNA12Q03113 381 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 C9orf50Q5SZB4 431 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 STEAP4Q687X5 459 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 Q6ZNB5 142 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 CYS1Q717R9 158 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 CFAP52Q8N1V2 620 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 TEX26Q8N6G2 289 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 HJURPQ8NCD3 748 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-233ENST00000557529 GSDMBQ8TAX9 411 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 ARHGEF2Q92974 986 aaKnown RBP12.72□□□□□ -0.37
SHMT2-233ENST00000557529 MYEOVQ96EZ4 313 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 PRICKLE1Q96MT3 831 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-233ENST00000557529 SLC22A12Q96S37 553 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 CYP2S1Q96SQ9 504 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 DHRS4Q9BTZ2 278 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 SLC25A51Q9H1U9 297 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 SAMD15Q9P1V8 674 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 PSMC3IPQ9P2W1 217 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-233ENST00000557529 ACTL7BQ9Y614 415 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 NUP205Q92621 2012 aa12.72□□□□□ -0.37
SHMT2-233ENST00000557529 DOCK4Q8N1I0 1966 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms