RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PGAM1P18669 254 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 ATP6V1C1P21283 382 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 CALB2P22676 271 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 PSMB4P28070 264 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 IFNAR2P48551 515 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 GPR15P49685 360 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 USP46P62068 366 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 EFEMP1Q12805 493 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 DUSP4Q13115 394 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 FRG1Q14331 258 aaKnown RBP12.92□□□□□ -0.34
SHMT2-229ENST00000557348 VEPH1Q14D04 833 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 HP1BP3Q5SSJ5 553 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-229ENST00000557348 AFMIDQ63HM1 303 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.92□□□□□ -0.344e-7■□□□□ 9.3
SHMT2-229ENST00000557348 RGS9BPQ6ZS82 235 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 CAPN12Q6ZSI9 719 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 ZNF534Q76KX8 674 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 SLC39A11Q8N1S5 342 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 UMODL1-AS1Q8N2C9 162 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 ZNF461Q8TAF7 563 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 TTC17Q96AE7 1141 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 MAGEB18Q96M61 343 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 TRAPPC9Q96Q05 1148 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 LRMDAQ9H2I8 198 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 TMEM248Q9NWD8 314 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 OSER1Q9NX31 292 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 SPG21Q9NZD8 308 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 UXTQ9UBK9 157 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-229ENST00000557348 DNMT3LQ9UJW3 386 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 HS3ST4Q9Y661 456 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 MAD1L1Q9Y6D9 718 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 MICAL3Q7RTP6 2002 aa12.92□□□□□ -0.34
SHMT2-229ENST00000557348 ARHGAP42A6NI28 874 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 PDLIM1O00151 329 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 KCNK1O00180 336 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 MATN3O15232 486 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 ABLIM3O94929 683 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 ZWINTO95229 277 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 OR1D2P34982 312 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 MAPKAPK2P49137 400 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 NPY2RP49146 381 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 IL9RQ01113 521 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 DNAJC3Q13217 504 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 PLD1Q13393 1074 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 DYNC1I2Q13409 638 aaKnown RBP12.91□□□□□ -0.34
SHMT2-229ENST00000557348 SETDB1Q15047 1291 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 TTC39BQ5VTQ0 682 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-229ENST00000557348 SDHAF4Q5VUM1 108 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 NECAB2Q7Z6G3 386 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 DDX53Q86TM3 631 aaKnown RBP12.91□□□□□ -0.34
SHMT2-229ENST00000557348 KLHDC8BQ8IXV7 354 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 PDCD7Q8N8D1 485 aaKnown RBP12.91□□□□□ -0.34
SHMT2-229ENST00000557348 ZNF398Q8TD17 642 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 BCL7CQ8WUZ0 217 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-229ENST00000557348 CFAP36Q96G28 342 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 TRMT2BQ96GJ1 504 aaKnown RBP12.91□□□□□ -0.34
SHMT2-229ENST00000557348 B3GALT6Q96L58 329 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 RNPEPL1Q9HAU8 725 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 RC3H2Q9HBD1 1191 aaKnown RBP12.91□□□□□ -0.34
SHMT2-229ENST00000557348 BFARQ9NZS9 450 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 SLC27A5Q9Y2P5 690 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 FNDC1Q4ZHG4 1894 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-229ENST00000557348 VWA8A3KMH1 1905 aa12.91□□□□□ -0.34
SHMT2-229ENST00000557348 DFFAO00273 331 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 TM9SF1O15321 606 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 TLR5O60602 858 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 DCTN3O75935 186 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 ALDH1A2O94788 518 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 VNN2O95498 520 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 MOCS2O96007 188 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-229ENST00000557348 POLBP06746 335 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 RAG1P15918 1043 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 ALDH3A1P30838 453 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 ATP5C1P36542 298 aaKnown RBP12.9□□□□□ -0.34
SHMT2-229ENST00000557348 ALDH1A3P47895 512 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 PAPOLAP51003 745 aaKnown RBP12.9□□□□□ -0.34
SHMT2-229ENST00000557348 BTG3Q14201 252 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-229ENST00000557348 TAF11Q15544 211 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 TAF12Q16514 161 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 KBTBD12Q3ZCT8 623 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 MS4A13Q5J8X5 152 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 SPANXN3Q5MJ09 141 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 PRSS55Q6UWB4 352 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-229ENST00000557348 UNC5AQ6ZN44 842 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 TMEM173Q86WV6 379 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-229ENST00000557348 CCDC117Q8IWD4 279 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-229ENST00000557348 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.9□□□□□ -0.342e-6■■■■■ 41.4
SHMT2-229ENST00000557348 CYP4X1Q8N118 509 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 GALNT15Q8N3T1 639 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 TTC9BQ8N6N2 239 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 DCAKDQ8WVC6 231 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 AZIN2Q96A70 460 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 MYRFLQ96LU7 910 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 TSC22D3Q99576 134 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 PRMT1Q99873 361 aaKnown RBP12.9□□□□□ -0.34
SHMT2-229ENST00000557348 FAM192AQ9GZU8 254 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 PRDM5Q9NQX1 630 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-229ENST00000557348 TTLL3Q9Y4R7 772 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 MYO16Q9Y6X6 1858 aa12.9□□□□□ -0.34
SHMT2-229ENST00000557348 FAM159BA6NKW6 160 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms