RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	OR6B1	O95007	311 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	FDX1	P10109	184 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF37A	P17032	561 aa	Predicted RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CRABP2	P29373	138 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	PPP3CC	P48454	512 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	RABGGTB	P53611	331 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	KLF10	Q13118	480 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	PTPN20	Q4JDL3	420 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	LIPM	Q5VYY2	423 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SCARA3	Q6AZY7	606 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ASRGL1	Q7L266	308 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SAMD3	Q8N6K7	520 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	C12orf29	Q8N999	325 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	FAM47B	Q8NA70	645 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	BPIFB6	Q8NFQ5	453 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	PSMA8	Q8TAA3	256 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	FBXO30	Q8TB52	745 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SEPT1	Q8WYJ6	367 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CD101	Q93033	1021 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CERS2	Q96G23	380 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	COQ7	Q99807	217 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	AP5M1	Q9H0R1	490 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	STN1	Q9H668	368 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	RIC8B	Q9NVN3	520 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	UBAP1	Q9NZ09	502 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF112	Q9UJU3	913 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SORCS3	Q9UPU3	1222 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	AAR2	Q9Y312	384 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	DOT1L	Q8TEK3	1739 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAST2	Q6P0Q8	1798 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	FADS2	O95864	444 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SNHG28	P0DPA3	235 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	NCK1	P16333	377 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	NR4A1	P22736	598 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	DEFA1	P59665	94 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	DEFA3	P59666	94 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	GTF2H3	Q13889	308 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	DALRD3	Q5D0E6	543 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF470	Q6ECI4	717 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	TXNRD3NB	Q6F5E7	133 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	DPY19L2	Q6NUT2	758 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC22A9	Q8IVM8	553 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZC3H3	Q8IXZ2	948 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	UNC5B	Q8IZJ1	945 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CALML6	Q8TD86	181 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	HASPIN	Q8TF76	798 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	TPD52L3	Q96J77	140 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZBED2	Q9BTP6	218 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	NT5M	Q9NPB1	228 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SCUBE2	Q9NQ36	999 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	DDIT4	Q9NX09	232 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	COPG2	Q9UBF2	871 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ADAM28	Q9UKQ2	775 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC8A2	Q9UPR5	921 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	PKP3	Q9Y446	797 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ANKRD36C	Q5JPF3	1778 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005		A0A0A0MRY4	1105 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ERI2	A8K979	691 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CCNT2	O60583	730 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	RNASEH1	O60930	286 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	TCEA3	O75764	348 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ANXA9	O76027	345 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	GUCA1C	O95843	209 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	JCHAIN	P01591	159 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	AMH	P03971	560 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SNRPB2	P08579	225 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	TFPT	P0C1Z6	253 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	UNG	P13051	313 aa	Predicted RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ITGB6	P18564	788 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CCNA2	P20248	432 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	FMO4	P31512	558 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	DSG3	P32926	999 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SOAT1	P35610	550 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	TKTL1	P51854	596 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	HK2	P52789	917 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC5A3	P53794	718 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CHRNB3	Q05901	458 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF846	Q147U1	533 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	LSM12	Q3MHD2	195 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	LRRC38	Q5VT99	294 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	KCTD8	Q6ZWB6	473 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	BRSK2	Q8IWQ3	736 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	C8orf59	Q8N0T1	100 aa	Predicted RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	EFHB	Q8N7U6	833 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF516	Q92618	1163 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SPATA13	Q96N96	652 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	TCF12	Q99081	682 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	TBCD	Q9BTW9	1192 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	PSMD13	Q9UNM6	376 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	EIF3L	Q9Y262	564 aa	Known RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	MFHAS1	Q9Y4C4	1052 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	UBIAD1	Q9Y5Z9	338 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	UBR2	Q8IWV8	1755 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZSCAN9	O15535	394 aa	Predicted RBP	5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	B4GALT5	O43286	388 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF862	O60290	1169 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC2A4	P14672	509 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CHRM3	P20309	590 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	ASPA	P45381	313 aa		5.06	□□□□□ -1.6
SYNE2-223	ENST00000557005	CCT8	P50990	548 aa		5.06	□□□□□ -1.6

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