RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 ZNF347Q96SE7 839 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 NAA50Q9GZZ1 169 aaKnown RBP15.94■□□□□ 0.14
SYNE3-203ENST00000554873 SEMA6AQ9H2E6 1030 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 QTRT2Q9H974 415 aaKnown RBP15.94■□□□□ 0.14
SYNE3-203ENST00000554873 PNPOQ9NVS9 261 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 SRCAPQ6ZRS2 3230 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 SUPT20HL2P0C7V6 817 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 HMGB2P26583 209 aaKnown RBP15.94■□□□□ 0.14
SYNE3-203ENST00000554873 CDH5P33151 784 aaPredicted RBP15.94■□□□□ 0.14
SYNE3-203ENST00000554873 SP2Q02086 613 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 GRSF1Q12849 480 aaKnown RBP eCLIP15.94■□□□□ 0.14
SYNE3-203ENST00000554873 SUPT20HL1Q3ZLR7 823 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 PPM1LQ5SGD2 360 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 FAM182AQ5T1J6 154 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 DENND1BQ6P3S1 775 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 LENG8Q96PV6 779 aaPredicted RBP15.94■□□□□ 0.14
SYNE3-203ENST00000554873 MTMR12Q9C0I1 747 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 IPO11Q9UI26 975 aaKnown RBP15.94■□□□□ 0.14
SYNE3-203ENST00000554873 TEX264Q9Y6I9 313 aa15.94■□□□□ 0.14
SYNE3-203ENST00000554873 A8MU76 341 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 PSMD11O00231 422 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 ZNF195O14628 629 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 CLOCKO15516 846 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 STAM2O75886 525 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 FGF3P11487 239 aaPredicted RBP15.93■□□□□ 0.14
SYNE3-203ENST00000554873 KRT3P12035 628 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 BASP1P80723 227 aaKnown RBP15.93■□□□□ 0.14
SYNE3-203ENST00000554873 DPYSL3Q14195 570 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 TAZQ16635 292 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 PTPN20Q4JDL3 420 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 NHSL2Q5HYW2 709 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 WDR45BQ5MNZ6 344 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 SIGIRRQ6IA17 410 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 RAVER1Q8IY67 606 aaKnown RBP15.93■□□□□ 0.14
SYNE3-203ENST00000554873 SIX5Q8N196 739 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 LSM14AQ8ND56 463 aaKnown RBP15.93■□□□□ 0.14
SYNE3-203ENST00000554873 CAPSLQ8WWF8 208 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 MED30Q96HR3 178 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 CNDP2Q96KP4 475 aaKnown RBP15.93■□□□□ 0.14
SYNE3-203ENST00000554873 SLC4A5Q9BY07 1137 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 TRAF6Q9Y4K3 522 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 TLL2Q9Y6L7 1015 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 WNT10BO00744 389 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 JRKO75564 520 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 ATG7O95352 703 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 C1QAP02745 245 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 KRT7P08729 469 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 NR4A1P22736 598 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 POLR2BP30876 1174 aaKnown RBP15.93■□□□□ 0.14
SYNE3-203ENST00000554873 PKNOX1P55347 436 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 PRAMEP78395 509 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 NME3Q13232 169 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 ZNF846Q147U1 533 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 VWA5B1Q5TIE3 1220 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 TFAP2CQ92754 450 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 MAELQ96JY0 434 aaKnown RBP15.93■□□□□ 0.14
SYNE3-203ENST00000554873 SLC29A1Q99808 456 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 FRMD8P1Q9BZ68 369 aaPredicted RBP15.93■□□□□ 0.14
SYNE3-203ENST00000554873 NANOGQ9H9S0 305 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 POLR1BQ9H9Y6 1135 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 ZNF277Q9NRM2 450 aaPredicted RBP15.93■□□□□ 0.14
SYNE3-203ENST00000554873 PCSK1NQ9UHG2 260 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 CYTH4Q9UIA0 394 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 PCDHGC3Q9UN70 934 aa15.93■□□□□ 0.14
SYNE3-203ENST00000554873 ACOT8O14734 319 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 MSI1O43347 362 aaKnown RBP15.92■□□□□ 0.14
SYNE3-203ENST00000554873 MYCLP1P12525 358 aaPredicted RBP15.92■□□□□ 0.14
SYNE3-203ENST00000554873 BMPR2Q13873 1038 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 SPCS2Q15005 226 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 TAF5Q15542 800 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 FAM117BQ6P1L5 589 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 ZBTB33Q86T24 672 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 BRSK2Q8IWQ3 736 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 EMC1Q8N766 993 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 SPERTQ8NA61 448 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 MTMR14Q8NCE2 650 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 FAR2Q96K12 515 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 NIF3L1Q9GZT8 377 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 LOC105371267A0A1B0GV96 52 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 GOLGA8CPA6NN73 597 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 SPATA31C2B4DYI2 1134 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 TPPPO94811 219 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 SERPINE1P05121 402 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 HSPA1LP34931 641 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 HPCAL1P37235 193 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 GABRB2P47870 512 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 ATXN3P54252 364 aaPredicted RBP15.92■□□□□ 0.14
SYNE3-203ENST00000554873 LRP8Q14114 963 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 HADHQ16836 314 aaKnown RBP15.92■□□□□ 0.14
SYNE3-203ENST00000554873 MAMDC4Q6UXC1 1216 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 SCARA5Q6ZMJ2 495 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 THNSL1Q8IYQ7 743 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 PGAM4Q8N0Y7 254 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 ATP6V1E2Q96A05 226 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 TRPV6Q9H1D0 765 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 CNGB3Q9NQW8 809 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 DUS2Q9NX74 493 aaKnown RBP15.92■□□□□ 0.14
SYNE3-203ENST00000554873 CRNNQ9UBG3 495 aaPredicted RBP15.92■□□□□ 0.14
SYNE3-203ENST00000554873 PCDHGA3Q9Y5H0 932 aa15.92■□□□□ 0.14
SYNE3-203ENST00000554873 CLDN25C9JDP6 229 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms