RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 MUC3BQ9H195 1237 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 PCED1AQ9H1Q7 454 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 C6orf106Q9H6K1 298 aaPredicted RBP10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 OR12D3Q9UGF7 316 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 SERGEFQ9UGK8 458 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 VPS51Q9UID3 782 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 SCML1Q9UN30 329 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 HS3ST2Q9Y278 367 aa10.54□□□□□ -0.72
CCDC88C-206ENST00000553437 ASPMQ8IZT6 3477 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 GOLGA6L19H0YKK7 550 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 MID1O15344 667 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 RNASEH1O60930 286 aaKnown RBP10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 ZMPSTE24O75844 475 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 LRIG2O94898 1065 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SEMA4FO95754 770 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 FTLP02792 175 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 CFIP05156 583 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 PLEKP08567 350 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SRCP12931 536 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 GLDCP23378 1020 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 OR1E1P30953 314 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SLC8A1P32418 973 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 KRT83P78385 493 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 KLHL30Q0D2K2 578 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 ELAVL3Q14576 367 aaKnown RBP10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 ARL13BQ3SXY8 428 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 TTC31Q49AM3 519 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 IL31Q6EBC2 164 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 PPP1R2P3Q6NXS1 205 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 RABEPKQ7Z6M1 372 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 RGL4Q8IZJ4 473 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 PYROXD2Q8N2H3 581 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 AADATQ8N5Z0 425 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 DCAF4L2Q8NA75 395 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 OR7D4Q8NG98 312 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SYN2Q92777 582 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 FAM131CQ96AQ9 280 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 CNTNAP3BQ96NU0 1288 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 ORAI3Q9BRQ5 295 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 CNPY3Q9BT09 278 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 C2orf49Q9BVC5 232 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 CNTNAP3Q9BZ76 1288 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 NEUROG2Q9H2A3 272 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 RETREG1Q9H6L5 497 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SGK2Q9HBY8 427 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 TMEM9BQ9NQ34 198 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 NDFIP2Q9NV92 336 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 FBXL12Q9NXK8 326 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 IFNKQ9P0W0 207 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 ADAMTS1Q9UHI8 967 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SLC25A13Q9UJS0 675 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SARDHQ9UL12 918 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 CAPN11Q9UMQ6 739 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SLCO1B1Q9Y6L6 691 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SETXQ7Z333 2677 aaKnown RBP10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 CKAP5Q14008 2032 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 SPAG17Q6Q759 2223 aa10.53□□□□□ -0.72
CCDC88C-206ENST00000553437 PLXND1Q9Y4D7 1925 aa10.52□□□□□ -0.72
CCDC88C-206ENST00000553437 A0A1W2PP55 124 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 TMEM191CA6NGB0 347 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 MEI4A8MW99 385 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 K7ERQ8 282 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 MCF2LO15068 1137 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 SMAD6O43541 496 aaKnown RBP10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 ZNF821O75541 412 aaPredicted RBP10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 CD160O95971 181 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 IGHV4-34P06331 123 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 GNSP15586 552 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 RHOQP17081 205 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 GOT1P17174 413 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 C5AR1P21730 350 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 L1CAMP32004 1257 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 DRD3P35462 400 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 PSMD8P48556 350 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 METAP1P53582 386 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 GALCP54803 685 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 GNA12Q03113 381 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 GFPT1Q06210 699 aaPredicted RBP10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 ZNF252P-AS1Q0IIN9 211 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 ACCSLQ4AC99 568 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 DCUN1D2Q6PH85 259 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 LINGO4Q6UY18 593 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 Q6ZVU0 165 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 SLFN11Q7Z7L1 901 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 DRC7Q8IY82 874 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 ARFGAP1Q8N6T3 406 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 BIRC7Q96CA5 298 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 ACE2Q9BYF1 805 aaPredicted RBP10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 ISCUQ9H1K1 167 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 PARVAQ9NVD7 372 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 TMEM248Q9NWD8 314 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 SUSD2Q9UGT4 822 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 EIF2B4Q9UI10 523 aaKnown RBP10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 PPM1HQ9ULR3 514 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 FZD4Q9ULV1 537 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 FZD10Q9ULW2 581 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 NCKAP1Q9Y2A7 1128 aa10.52□□□□□ -0.73
CCDC88C-206ENST00000553437 FASNP49327 2511 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 A0A1B0GTW7 788 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms