RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 LMLNQ96KR4 655 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 FEM1AQ9BSK4 669 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 CARD6Q9BX69 1037 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 SP110Q9HB58 689 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 ATP13A1Q9HD20 1204 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 GGA2Q9UJY4 613 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 VPS28Q9UK41 221 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 TRHDEQ9UKU6 1024 aa16.38■□□□□ 0.21
PRPF40A-212ENST00000545856 MYO18AQ92614 2054 aaKnown RBP16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 C5orf60A6NFR6 353 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 DFFAO00273 331 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 SCAMP3O14828 347 aaKnown RBP16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 NPC1O15118 1278 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 MAFKO60675 156 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 SRFP11831 508 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 PABPC1P11940 636 aaKnown RBP16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 ARSAP15289 507 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 GJA4P35212 333 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 PAPOLAP51003 745 aaKnown RBP16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 GRM2Q14416 872 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 LLGL1Q15334 1064 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 RNF219Q5W0B1 726 aaPredicted RBP16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 GRAMD4Q6IC98 578 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 NPNTQ6UXI9 565 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 ADAT2Q7Z6V5 191 aaKnown RBP16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 RALGPS2Q86X27 583 aaPredicted RBP16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 CIR1Q86X95 450 aaPredicted RBP16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 SLC44A3Q8N4M1 653 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 CCDC89Q8N998 374 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 CCNYQ8ND76 341 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 RSAD2Q8WXG1 361 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 ALG14Q96F25 216 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 HMCESQ96FZ2 354 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 DDX47Q9H0S4 455 aaKnown RBP16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 PCDH9Q9HC56 1237 aa16.37■□□□□ 0.21
PRPF40A-212ENST00000545856 A0A0A0MRY4 1105 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 C19orf67A6NJJ6 358 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 OPHN1O60890 802 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 TULP3O75386 442 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 GCATO75600 419 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 IL9P15248 144 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 CES1P23141 567 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 HLA-FP30511 346 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 DR1Q01658 176 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 ZP2Q05996 745 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 LMAN2Q12907 356 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 RALGPS1Q5JS13 557 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 TRIM68Q6AZZ1 485 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 IL31Q6EBC2 164 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 ITPRIPL1Q6GPH6 555 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 C8orf74Q6P047 294 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 ZC3H18Q86VM9 953 aaKnown RBP16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 TEX26Q8N6G2 289 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 KCNV2Q8TDN2 545 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 ATG4AQ8WYN0 398 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 TTC17Q96AE7 1141 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 CELF6Q96J87 481 aaKnown RBP16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 ZFYVE19Q96K21 471 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 FAM129AQ9BZQ8 928 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 RAB17Q9H0T7 212 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 PDFQ9HBH1 243 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 ABCB8Q9NUT2 735 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 DNAJC17Q9NVM6 304 aaKnown RBP16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 SMARCAL1Q9NZC9 954 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 SAE1Q9UBE0 346 aaPredicted RBP16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 LIMD1Q9UGP4 676 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 MFHAS1Q9Y4C4 1052 aa16.36■□□□□ 0.21
PRPF40A-212ENST00000545856 SMAPO00193 183 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 ATP5BP06576 529 aaKnown RBP16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 TUBBP07437 444 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 SRPRAP08240 638 aaKnown RBP16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 CISD3P0C7P0 127 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 CSKP41240 450 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 GRIA2P42262 883 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 AP1B1Q10567 949 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 GAB4Q2WGN9 574 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 PITRM1Q5JRX3 1037 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 UCMAQ8WVF2 138 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 P2RY11Q96G91 374 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 CCDC114Q96M63 670 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 PNKPQ96T60 521 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 KRT12Q99456 494 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 LGMNQ99538 433 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 IL12RB2Q99665 862 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 USP29Q9HBJ7 922 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 PLK2Q9NYY3 685 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 PAK5Q9P286 719 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 DUSP12Q9UNI6 340 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 SORCS3Q9UPU3 1222 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 HS3ST2Q9Y278 367 aa16.35■□□□□ 0.21
PRPF40A-212ENST00000545856 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 A0A0D9SEW6 157 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 ZMPSTE24O75844 475 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 POLR2EP19388 210 aaKnown RBP16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 TFF2Q03403 129 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 PTK6Q13882 451 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 SLC14A2Q15849 920 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 TEX44Q53QW1 395 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 FSCBQ5H9T9 825 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 MARC1Q5VT66 337 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms