RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 PTPN3P26045 913 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 TM4SF1P30408 202 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 ECM1Q16610 540 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 DDR2Q16832 855 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 FAM117BQ6P1L5 589 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 TOP6BLQ8N6T0 577 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 SH3GL2Q99962 352 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 ARMCX1Q9P291 453 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 PSMD12O00232 456 aaPredicted RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 HOXB6P17509 224 aaKnown RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 GSTA3Q16772 222 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 C15orf59Q2T9L4 293 aaPredicted RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 ARMCX4Q5H9R4 360 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 AAGABQ6PD74 315 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 EXOC3L1Q86VI1 746 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 ZSWIM2Q8NEG5 633 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 METTL6Q8TCB7 284 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 MRPL57Q9BQC6 102 aaKnown RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 LRMDAQ9H2I8 198 aa12.72□□□□□ -0.37
COL4A6-209ENST00000545689 TIMM13Q9Y5L4 95 aaPredicted RBP12.72□□□□□ -0.37
COL4A6-209ENST00000545689 FAM220BPB1ANY3 271 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 ANXA6P08133 673 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 CKBP12277 381 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 LYPLAL1Q5VWZ2 237 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 TFAP2DQ7Z6R9 452 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 FAM126BQ8IXS8 530 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 TMEM109Q9BVC6 243 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 RAP2CQ9Y3L5 183 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 PROCP04070 461 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 ERVK-10P10266 1014 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 CES1P23141 567 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 NPNTQ6UXI9 565 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 GPSM1Q86YR5 675 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 FIG4Q92562 907 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 STMN3Q9NZ72 180 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 PCDHB12Q9Y5F1 795 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 FMN2Q9NZ56 1722 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 TMEM191CA6NGB0 347 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 MLYCDO95822 493 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 RPN2P04844 631 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 HPCAL1P37235 193 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 IL2P60568 153 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 CCDC142Q17RM4 750 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 HGSNATQ68CP4 663 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 AFTPHQ6ULP2 937 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 ZCCHC23Q6ZST2 131 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 METTL3Q86U44 580 aaKnown RBP12.71□□□□□ -0.37
COL4A6-209ENST00000545689 TRABD2AQ86V40 505 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 IQCKQ8N0W5 287 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 DHRSXQ8N5I4 330 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 TMEM159Q96B96 161 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 FAM126AQ9BYI3 521 aaPredicted RBP12.71□□□□□ -0.37
COL4A6-209ENST00000545689 ZNF112Q9UJU3 913 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 SPEF2Q9C093 1822 aa12.71□□□□□ -0.37
COL4A6-209ENST00000545689 BTN3A1O00481 513 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 DLGAP3O95886 979 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 COX4I1P13073 169 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 ITGB5P18084 799 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 POLD2P49005 469 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 MARCKSL1P49006 195 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 JAM2P57087 298 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 ARMC12Q5T9G4 340 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 PIWIL4Q7Z3Z4 852 aaKnown RBP12.71□□□□□ -0.38
COL4A6-209ENST00000545689 C12orf50Q8NA57 414 aaPredicted RBP12.71□□□□□ -0.38
COL4A6-209ENST00000545689 OR52K1Q8NGK4 314 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 ELMO3Q96BJ8 720 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 ARMC7Q9H6L4 198 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 MIEF1Q9NQG6 463 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 KLHL20Q9Y2M5 609 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 SLC15A5A6NIM6 579 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 TRIM24O15164 1050 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 INPP4BO15327 924 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 STAU1O95793 577 aaKnown RBP12.71□□□□□ -0.38
COL4A6-209ENST00000545689 MLH1P40692 756 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 IL5RAQ01344 420 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 SLC39A12Q504Y0 691 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 PLEKHA7Q6IQ23 1121 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 B3GALNT2Q8NCR0 500 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 HGH1Q9BTY7 390 aa12.71□□□□□ -0.38
COL4A6-209ENST00000545689 MTF2Q9Y483 593 aaPredicted RBP12.71□□□□□ -0.38
COL4A6-209ENST00000545689 IFRD1O00458 451 aaPredicted RBP12.7□□□□□ -0.38
COL4A6-209ENST00000545689 FAM20BO75063 409 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 BCL10O95999 233 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 ADCYAP1R1P41586 468 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 POLR2LP62875 67 aaKnown RBP12.7□□□□□ -0.38
COL4A6-209ENST00000545689 BCL2L1Q07817 233 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 BNIP2Q12982 314 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 VGLL4Q14135 290 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 CAMK1DQ8IU85 385 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 POU5F2Q8N7G0 328 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 MBOAT7Q96N66 472 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 KLHL28Q9NXS3 571 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 ANAPC2Q9UJX6 822 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 FAM171A1Q5VUB5 890 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 TXNDC11Q6PKC3 985 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 CES3Q6UWW8 571 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 CCDC103Q8IW40 242 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 NKX2-3Q8TAU0 364 aa12.7□□□□□ -0.38
COL4A6-209ENST00000545689 NMD3Q96D46 503 aaKnown RBP12.7□□□□□ -0.38
COL4A6-209ENST00000545689 OPTCQ9UBM4 332 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms