RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 ALOX15BO15296 676 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 FFAR2O15552 330 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 ARHGAP6O43182 974 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 GADD45BO75293 160 aaPredicted RBP13.2□□□□□ -0.3
USP28-212ENST00000544750 MOCS2O96007 188 aaPredicted RBP13.2□□□□□ -0.3
USP28-212ENST00000544750 EPB41P11171 864 aaKnown RBP13.2□□□□□ -0.3
USP28-212ENST00000544750 MYF5P13349 255 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 PDGFRAP16234 1089 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 NNMTP40261 264 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 NUMBP49757 651 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 KCNC4Q03721 635 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 POM121L1PQ3SYA9 428 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 PIP5KL1Q5T9C9 394 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 FAM46CQ5VWP2 391 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 CXorf57Q6NSI4 855 aaKnown RBP13.2□□□□□ -0.3
USP28-212ENST00000544750 INO80CQ6PI98 192 aaPredicted RBP13.2□□□□□ -0.3
USP28-212ENST00000544750 TMEM270Q6UE05 265 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 CCAR2Q8N163 923 aaKnown RBP13.2□□□□□ -0.3
USP28-212ENST00000544750 SLC22A18ASQ8N1D0 253 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 USP29Q9HBJ7 922 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 THSD1Q9NS62 852 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 GPR27Q9NS67 375 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 NLGN3Q9NZ94 848 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 CHMP5Q9NZZ3 219 aa13.2□□□□□ -0.3
USP28-212ENST00000544750 UBR5O95071 2799 aaPredicted RBP13.2□□□□□ -0.3
USP28-212ENST00000544750 COL12A1Q99715 3063 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 AHCTF1Q8WYP5 2266 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 M0QYV0 167 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 CETN3O15182 167 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 SLC31A1O15431 190 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 WISP1O95388 367 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 CALCAP01258 141 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 TBXAS1P24557 533 aaPredicted RBP13.19□□□□□ -0.3
USP28-212ENST00000544750 BRD2P25440 801 aaKnown RBP13.19□□□□□ -0.3
USP28-212ENST00000544750 PNOCQ13519 176 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 STILQ15468 1287 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 ISXQ2M1V0 245 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 ZC3H12AQ5D1E8 599 aaKnown RBP13.19□□□□□ -0.3
USP28-212ENST00000544750 NEK5Q6P3R8 708 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 ABI3BPQ7Z7G0 1075 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 DSG4Q86SJ6 1040 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 CHSY1Q86X52 802 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 CIR1Q86X95 450 aaPredicted RBP13.19□□□□□ -0.3
USP28-212ENST00000544750 OR13H1Q8NG92 308 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 OR52K2Q8NGK3 314 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 ERCC4Q92889 916 aaPredicted RBP13.19□□□□□ -0.3
USP28-212ENST00000544750 SLC35C1Q96A29 364 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 CCDC47Q96A33 483 aaKnown RBP13.19□□□□□ -0.3
USP28-212ENST00000544750 IFT43Q96FT9 208 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 BTN2A3PQ96KV6 586 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 SLC46A1Q96NT5 459 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 NOX5Q96PH1 765 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 MIS12Q9H081 205 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 OR51B4Q9Y5P0 310 aa13.19□□□□□ -0.3
USP28-212ENST00000544750 DOPEY2Q9Y3R5 2298 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 A0A1W2PQU0 124 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 TCAF2A6NFQ2 919 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 CDRT15L2A8MXV6 281 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 C1QTNF3-AMACRE9PGA6 284 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 K7ESM1 405 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 RNF103O00237 685 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 SCAMP1O15126 338 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 SLC16A3O15427 465 aaKnown RBP13.18□□□□□ -0.3
USP28-212ENST00000544750 APOEP02649 317 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 CTSLP07711 333 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 PRLRP16471 622 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 TGM2P21980 687 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 GPD2P43304 727 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 PITX1P78337 314 aaPredicted RBP13.18□□□□□ -0.3
USP28-212ENST00000544750 LRMPQ12912 555 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 DLG2Q15700 870 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 ZNF284Q2VY69 593 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 HS1BP3Q53T59 392 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 DCAF17Q5H9S7 520 aaPredicted RBP13.18□□□□□ -0.3
USP28-212ENST00000544750 TCERG1LQ5VWI1 586 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 KIAA1614Q5VZ46 1190 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 GCNT7Q6ZNI0 430 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 Q6ZVU0 165 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 HORMAD1Q86X24 394 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 SMYD4Q8IYR2 804 aaPredicted RBP13.18□□□□□ -0.3
USP28-212ENST00000544750 KLK6Q92876 244 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 KAT5Q92993 513 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 MYOCQ99972 504 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.18□□□□□ -0.3
USP28-212ENST00000544750 FZD3Q9NPG1 666 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 ZFR2Q9UPR6 939 aaKnown RBP13.18□□□□□ -0.3
USP28-212ENST00000544750 SATB2Q9UPW6 733 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 ENTPD2Q9Y5L3 495 aa13.18□□□□□ -0.3
USP28-212ENST00000544750 GOLGA6L4A6NEF3 574 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 KCNU1A8MYU2 1149 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 F5H5T6 163 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 PMM2O15305 246 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 SART1O43290 800 aaKnown RBP13.17□□□□□ -0.3
USP28-212ENST00000544750 SLC28A2O43868 658 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 TRUB2O95900 331 aaKnown RBP13.17□□□□□ -0.3
USP28-212ENST00000544750 ALPPL2P10696 532 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 HNRNPA2B1P22626 353 aaKnown RBP13.17□□□□□ -0.3
USP28-212ENST00000544750 DUSP3P51452 185 aaPredicted RBP13.17□□□□□ -0.3
USP28-212ENST00000544750 IRAK1P51617 712 aa13.17□□□□□ -0.3
USP28-212ENST00000544750 C3orf38Q5JPI3 329 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms