RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PCDHB2Q9Y5E7 798 aa8.89□□□□□ -0.99
YBX3-208ENST00000540447 PTPRTO14522 1441 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 KIAA0391O15091 583 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 MID1O15344 667 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PGRP06401 933 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ABHD2P08910 425 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 NMT1P30419 496 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 MAGEA12P43365 314 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 CYP4F8P98187 520 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PTSQ03393 145 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 SLC18A2Q05940 514 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 C16orf46Q6P387 395 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ARCQ7LC44 396 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 FAM126BQ8IXS8 530 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 LEMD2Q8NC56 503 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ING5Q8WYH8 240 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 TMEM168Q9H0V1 697 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 KAT8Q9H7Z6 458 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 TRPM5Q9NZQ8 1165 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 CLCA2Q9UQC9 943 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ST14Q9Y5Y6 855 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 G3V2T6 193 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PLOD2O00469 737 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 NRP2O60462 931 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 CPSF4O95639 269 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 CHRNGP07510 517 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 SERPINF2P08697 491 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 IDI1Q13907 227 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PTPAQ15257 358 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 VPS72Q15906 364 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 HKDC1Q2TB90 917 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ANKS3Q6ZW76 656 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 CLYBLQ8N0X4 340 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 EXD1Q8NHP7 514 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ETNPPLQ8TBG4 499 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 KCNS3Q9BQ31 491 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 MMTAG2Q9BU76 263 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 AKAP7Q9P0M2 348 aaPredicted RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 PTGFRNQ9P2B2 879 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 MAB21L2Q9Y586 359 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 KDM5AP29375 1690 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 DENND3A2RUS2 1198 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 DCDC2CA8MYV0 355 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PLK4O00444 970 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 KCNQ3O43525 872 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 SCGNO76038 276 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PIGNO95427 931 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PRG2P13727 222 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 YAP1P46937 504 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 TPI1P60174 286 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PDIA5Q14554 519 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 SNAPC1Q16533 368 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ZNF662Q6ZS27 426 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 COLGALT2Q8IYK4 626 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 Q96MT0 163 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 LRRC40Q9H9A6 602 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 GSAPA4D1B5 854 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 A8MV72 311 aaPredicted RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 PDE8BO95263 885 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PRELPP51888 382 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 DRG2P55039 364 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 DCDC1P59894 354 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 MGAT5Q09328 741 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 RIPPLY1Q0D2K3 151 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 E2F2Q14209 437 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 STRIP1Q5VSL9 837 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 NAPEPLDQ6IQ20 393 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 CRTC1Q6UUV9 634 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 USP43Q70EL4 1123 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 C11orf24Q96F05 449 aaPredicted RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 STRBPQ96SI9 672 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 CENPOQ9BU64 300 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 TMEM260Q9NX78 707 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 VANGL2Q9ULK5 521 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ATP8B3O60423 1300 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 M0QZ92 97 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 CASKO14936 926 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 APOC1P02654 83 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ZNF14P17017 642 aaPredicted RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 MAPK1P28482 360 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 CHI3L1P36222 383 aaPredicted RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 PPP3CCP48454 512 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 RAB2AP61019 212 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 ZNF45Q02386 682 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 RPA4Q13156 261 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PPIL2Q13356 520 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 GRTP1Q5TC63 336 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 DUPD1Q68J44 220 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 KRT28Q7Z3Y7 464 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 MAFIPQ8WZ33 124 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 CIDECQ96AQ7 238 aaPredicted RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 GMCL1Q96IK5 515 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 CHIAQ9BZP6 476 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 UNKQ9C0B0 810 aaKnown RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 TREM1Q9NP99 234 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 PAQR5Q9NXK6 330 aaPredicted RBP8.88□□□□□ -0.99
YBX3-208ENST00000540447 LNPEPQ9UIQ6 1025 aa8.88□□□□□ -0.99
YBX3-208ENST00000540447 AVILO75366 819 aa8.87□□□□□ -0.99
YBX3-208ENST00000540447 CYP2C8P10632 490 aa8.87□□□□□ -0.99
YBX3-208ENST00000540447 ENDOUP21128 410 aaKnown RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms