RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 IL31Q6EBC2 164 aa19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 DARS2Q6PI48 645 aaKnown RBP19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 CCDC137Q6PK04 289 aaKnown RBP19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 BMP8AQ7Z5Y6 402 aa19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 APCDD1Q8J025 514 aa19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 ATPAF2Q8N5M1 289 aa19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 ZNF557Q8N988 423 aaPredicted RBP19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 TFB1MQ8WVM0 346 aaKnown RBP19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 QKIQ96PU8 341 aaKnown RBP eCLIP19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 KRT12Q99456 494 aa19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 TMEM121Q9BTD3 319 aa19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 ACE2Q9BYF1 805 aaPredicted RBP19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 IPO11Q9UI26 975 aaKnown RBP19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 INTS6Q9UL03 887 aaKnown RBP19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 ZNF148Q9UQR1 794 aa19.35■□□□□ 0.69
TNFRSF1A-213ENST00000540022 BCLAF3A2AJT9 711 aaKnown RBP19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 HACD1B0YJ81 288 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 J3KR12 359 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 VAV1P15498 845 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 GLDCP23378 1020 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 RBL1P28749 1068 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 FNTAP49354 379 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 OXCT1P55809 520 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 MESP2Q0VG99 397 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 KCTD19Q17RG1 926 aaPredicted RBP19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 PLEKHG6Q3KR16 790 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 SLC45A4Q5BKX6 768 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 FAM182AQ5T1J6 154 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 NAIF1Q69YI7 327 aaPredicted RBP19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 ZNF354CQ86Y25 554 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 LRRC49Q8IUZ0 686 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 NOA1Q8NC60 698 aaKnown RBP19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 CSGALNACT1Q8TDX6 532 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 TSGA13Q96PP4 275 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 BRD8Q9H0E9 1235 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 ATP13A1Q9HD20 1204 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 GGA2Q9UJY4 613 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 VPS28Q9UK41 221 aa19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 DRG1Q9Y295 367 aaKnown RBP19.34■□□□□ 0.69
TNFRSF1A-213ENST00000540022 RIOK3O14730 519 aaKnown RBP19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 ITGAVP06756 1048 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 PABPC1P11940 636 aaKnown RBP19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 ETFBP38117 255 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 OPRD1P41143 372 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 SOX9P48436 509 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 DGKGP49619 791 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 PLK1P53350 603 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 AP1B1Q10567 949 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 SLC12A1Q13621 1099 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 PITRM1Q5JRX3 1037 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 KIAA0907Q7Z7F0 614 aaPredicted RBP19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 CDKL3Q8IVW4 592 aaPredicted RBP19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 CCDC105Q8IYK2 499 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 USP29Q9HBJ7 922 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 TRPV5Q9NQA5 729 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 AMACRQ9UHK6 382 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 DOCK4Q8N1I0 1966 aa19.33■□□□□ 0.68
TNFRSF1A-213ENST00000540022 KDELR3O43731 214 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 SNAP91O60641 907 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 CCNCP24863 283 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 NRLP54845 237 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 GDF10P55107 478 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 FUT11Q495W5 492 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 CCDC13Q8IYE1 715 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 UBALD2Q8IYN6 164 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 DCAF4L2Q8NA75 395 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 ATL2Q8NHH9 583 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 CCDC114Q96M63 670 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 DEC1Q9P2X7 70 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 PCYOX1Q9UHG3 505 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 HCN4Q9Y3Q4 1203 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 COL4A3Q01955 1670 aa19.32■□□□□ 0.68
TNFRSF1A-213ENST00000540022 KCNK1O00180 336 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 CBX4O00257 560 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 KCNN4O15554 427 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 PRAMEF11O60813 436 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 ZMPSTE24O75844 475 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 SLU7O95391 586 aaKnown RBP19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 PEX11BO96011 259 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 MRPS25P82663 173 aaKnown RBP19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 ZNF33AQ06730 810 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 IL10RBQ08334 325 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 GEN1Q17RS7 908 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 HEATR6Q6AI08 1181 aaKnown RBP19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 LEKR1Q6ZMV7 388 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 ADIPOR2Q86V24 386 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 PHTF2Q8N3S3 785 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 MMGT1Q8N4V1 131 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 FAM71DQ8N9W8 422 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 HTR3CQ8WXA8 447 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 PBXIP1Q96AQ6 731 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 SP110Q9HB58 689 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 PDFQ9HBH1 243 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 VPS51Q9UID3 782 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 DUSP12Q9UNI6 340 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 SLC27A6Q9Y2P4 619 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 ACTL7AQ9Y615 435 aa19.31■□□□□ 0.68
TNFRSF1A-213ENST00000540022 MATN3O15232 486 aa19.3■□□□□ 0.68
TNFRSF1A-213ENST00000540022 SRFP11831 508 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms