RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 ETFBP38117 255 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 PRKCIP41743 596 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 PI4KAP42356 2102 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 GRIA4P48058 902 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 MAPKAPK2P49137 400 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 ZNF143P52747 638 aaPredicted RBP11.85□□□□□ -0.51
RTN3-209ENST00000538995 HDAC4P56524 1084 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 HNRNPDQ14103 355 aaKnown RBP11.85□□□□□ -0.51
RTN3-209ENST00000538995 TEAD4Q15561 434 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 DLG2Q15700 870 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 CDO1Q16878 200 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 C15orf59Q2T9L4 293 aaPredicted RBP11.85□□□□□ -0.51
RTN3-209ENST00000538995 UAP1L1Q3KQV9 507 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 FIGNQ5HY92 759 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 SH3PXD2AQ5TCZ1 1133 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 FAM46CQ5VWP2 391 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 KIAA0895LQ68EN5 471 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 ACAD10Q6JQN1 1059 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 TFAP2DQ7Z6R9 452 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 PIP4P1Q86T03 277 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 MCOLN2Q8IZK6 566 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 OR2T34Q8NGX1 318 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 FAM172AQ8WUF8 416 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 SNX19Q92543 992 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 BIRC7Q96CA5 298 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 TTYH3Q9C0H2 523 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 KDM4CQ9H3R0 1056 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 SLC32A1Q9H598 525 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 FSCN3Q9NQT6 498 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 AIPL1Q9NZN9 384 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 MPP6Q9NZW5 540 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 OR12D3Q9UGF7 316 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 SERGEFQ9UGK8 458 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 VPS51Q9UID3 782 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 ACACBO00763 2458 aa11.85□□□□□ -0.51
RTN3-209ENST00000538995 TPRP12270 2363 aaKnown RBP11.84□□□□□ -0.51
RTN3-209ENST00000538995 A0A0D9SEW6 157 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 MCF2LO15068 1137 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 SRGAP2O75044 1071 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 GJB3O75712 270 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 FSBPO95073 299 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 SERPINC1P01008 464 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 IL1BP01584 269 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 IGHV4-34P06331 123 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 ZNF883P0CG24 379 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 SRCP12931 536 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 VAV1P15498 845 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 RHOQP17081 205 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 TNFAIP3P21580 790 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 PMLP29590 882 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 CCR5P51681 352 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 GALCP54803 685 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 ADPRHP54922 357 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 AIF1P55008 147 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 SLC20A2Q08357 652 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 ASIC2Q16515 512 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 ACCSLQ4AC99 568 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 PPP1R15BQ5SWA1 713 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 N4BP2L1Q5TBK1 243 aaPredicted RBP11.84□□□□□ -0.51
RTN3-209ENST00000538995 RETSATQ6NUM9 610 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 NCEH1Q6PIU2 408 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 WDR59Q6PJI9 974 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 Q6ZVU0 165 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 PHLDB2Q86SQ0 1253 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 AADATQ8N5Z0 425 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 ATP11CQ8NB49 1132 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 TBC1D31Q96DN5 1066 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 IQCDQ96DY2 449 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 NAP1L5Q96NT1 182 aaPredicted RBP11.84□□□□□ -0.51
RTN3-209ENST00000538995 MCEEQ96PE7 176 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 CNPY3Q9BT09 278 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 CEP44Q9C0F1 390 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 NEUROG2Q9H2A3 272 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 CBX8Q9HC52 389 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 TM9SF3Q9HD45 589 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 TMEM248Q9NWD8 314 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 PPM1HQ9ULR3 514 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 NEU3Q9UQ49 428 aa11.84□□□□□ -0.51
RTN3-209ENST00000538995 FARP1Q9Y4F1 1045 aaPredicted RBP11.84□□□□□ -0.51
RTN3-209ENST00000538995 A0A1W2PPC4 97 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 CCP110O43303 1012 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 SNAP91O60641 907 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 LRIG2O94898 1065 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 GJB6O95452 261 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 PLEKP08567 350 aaPredicted RBP11.83□□□□□ -0.52
RTN3-209ENST00000538995 GZMAP12544 262 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 RRM1P23921 792 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 DRD3P35462 400 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 NUDT1P36639 197 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 NUMBP49757 651 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 GEMIN4P57678 1058 aaKnown RBP11.83□□□□□ -0.52
RTN3-209ENST00000538995 RACK1P63244 317 aaKnown RBP11.83□□□□□ -0.52
RTN3-209ENST00000538995 SHC2P98077 582 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 GNA12Q03113 381 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 ZNF252P-AS1Q0IIN9 211 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 CCDC15Q0P6D6 951 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 NR1I3Q14994 352 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 RAB6CQ53S08 254 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 EFHC2Q5JST6 749 aa11.83□□□□□ -0.52
RTN3-209ENST00000538995 SFMBT2Q5VUG0 894 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms