RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 PTPRN2Q92932 1015 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 NSMCE3Q96MG7 304 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 TPSD1Q9BZJ3 242 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 MUC3BQ9H195 1237 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 PRSS16Q9NQE7 514 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 VPS28Q9UK41 221 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 GPR179Q6PRD1 2367 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 TCRBV21S2A2A0A5A6 115 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 GOLGA6L6A8MZA4 724 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 J3KR12 359 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 DDX3YO15523 660 aaKnown RBP13.39□□□□□ -0.27
CHFR-216ENST00000538235 LAMTOR5O43504 91 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 SIN3BO75182 1162 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 GJB3O75712 270 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 PALMO75781 387 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 FTCDO95954 541 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 PEX11BO96011 259 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 KRT1P04264 644 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 KDELR1P24390 212 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 HCAR3P49019 387 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 CCR3P51677 355 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 ECT2LQ008S8 904 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 SLC10A2Q12908 348 aaPredicted RBP13.39□□□□□ -0.27
CHFR-216ENST00000538235 CAMK2GQ13555 558 aaPredicted RBP13.39□□□□□ -0.27
CHFR-216ENST00000538235 FNDC3BQ53EP0 1204 aaKnown RBP13.39□□□□□ -0.27
CHFR-216ENST00000538235 C6orf118Q5T5N4 469 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 ANO7Q6IWH7 933 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 NPNTQ6UXI9 565 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 SERPINA13PQ6UXR4 307 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 REXO1L1PQ8IX06 675 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 SH2D3CQ8N5H7 860 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 PLD5Q8N7P1 536 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 ACDQ96AP0 544 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 RNF25Q96BH1 459 aaPredicted RBP13.39□□□□□ -0.27
CHFR-216ENST00000538235 PPP1R9BQ96SB3 815 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 IER2Q9BTL4 223 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 ATP13A1Q9HD20 1204 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 TMEM51Q9NW97 253 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 EBF1Q9UH73 591 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 HS3ST2Q9Y278 367 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 PPP2R2CQ9Y2T4 447 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 FCF1Q9Y324 198 aaKnown RBP13.39□□□□□ -0.27
CHFR-216ENST00000538235 R4GN57 208 aa13.39□□□□□ -0.27
CHFR-216ENST00000538235 LRRD1A4D1F6 860 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 H3BRJ5 948 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 CBX4O00257 560 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 FGF10O15520 208 aaPredicted RBP13.38□□□□□ -0.27
CHFR-216ENST00000538235 SPOPO43791 374 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 ATP9BO43861 1147 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 RAMP2O60895 175 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 EPHX1P07099 455 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 CTSLP07711 333 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 BCKDHBP21953 392 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 RGRP47804 291 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 PEX5P50542 639 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 KRT83P78385 493 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 GBE1Q04446 702 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 SERINC3Q13530 473 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 SLC12A1Q13621 1099 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 HNRNPA1L2Q32P51 320 aaKnown RBP13.38□□□□□ -0.27
CHFR-216ENST00000538235 ANKRD20A8PQ5CZ79 823 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 C9orf64Q5T6V5 341 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 ACBD5Q5T8D3 534 aaPredicted RBP13.38□□□□□ -0.27
CHFR-216ENST00000538235 Q6ZVU0 165 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 DAAM2Q86T65 1068 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 FAM160A2Q8N612 972 aaPredicted RBP13.38□□□□□ -0.27
CHFR-216ENST00000538235 CHST14Q8NCH0 376 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 KCNV2Q8TDN2 545 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 MRGPRX1Q96LB2 322 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 ZNF670Q9BS34 389 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 SPON2Q9BUD6 331 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 FBXO4Q9UKT5 387 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 INVSQ9Y283 1065 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 MYLKQ15746 1914 aa13.38□□□□□ -0.27
CHFR-216ENST00000538235 SDK1Q7Z5N4 2213 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 FRYLO94915 3013 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 MUSKO15146 869 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 PSTPIP1O43586 416 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 LILRB5O75023 590 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 ASLP04424 464 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 SRPRAP08240 638 aaKnown RBP13.37□□□□□ -0.27
CHFR-216ENST00000538235 C7P10643 843 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 KRT10P13645 584 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 PECAM1P16284 738 aaPredicted RBP13.37□□□□□ -0.27
CHFR-216ENST00000538235 HTR7P34969 479 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 CTNNA1P35221 906 aaKnown RBP13.37□□□□□ -0.27
CHFR-216ENST00000538235 CDKN2BP42772 138 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 SLC1A1P43005 524 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 SERPINH1P50454 418 aaKnown RBP13.37□□□□□ -0.27
CHFR-216ENST00000538235 PAPOLAP51003 745 aaKnown RBP13.37□□□□□ -0.27
CHFR-216ENST00000538235 KRT81Q14533 505 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 POLD3Q15054 466 aaPredicted RBP13.37□□□□□ -0.27
CHFR-216ENST00000538235 HADHQ16836 314 aaKnown RBP13.37□□□□□ -0.27
CHFR-216ENST00000538235 HSF5Q4G112 596 aaPredicted RBP13.37□□□□□ -0.27
CHFR-216ENST00000538235 EOGTQ5NDL2 527 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 LRRC38Q5VT99 294 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 C22orf39Q6P5X5 142 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 ZNF783Q6ZMS7 281 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 B4GALNT4Q76KP1 1039 aa13.37□□□□□ -0.27
CHFR-216ENST00000538235 RHOT1Q8IXI2 618 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms