RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	CFAP52	Q8N1V2	620 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	STK40	Q8N2I9	435 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	OR14C36	Q8NHC7	312 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	FRS2	Q8WU20	508 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	RFFL	Q8WZ73	363 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	KAT5	Q92993	513 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	SMARCE1	Q969G3	411 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	SERAC1	Q96JX3	654 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	SPAG5	Q96R06	1193 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	PPP1R9B	Q96SB3	815 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	PRMT1	Q99873	361 aa	Known RBP	11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	MIS12	Q9H081	205 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	NAT10	Q9H0A0	1025 aa	Known RBP	11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	POPDC2	Q9HBU9	364 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	ARHGAP20	Q9P2F6	1191 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	DMTF1	Q9Y222	760 aa		11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	11.9	□□□□□ -0.5
CTNND1-238	ENST00000534647	TMEM131	Q92545	1883 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	GCN1	Q92616	2671 aa	Known RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3D	A0A087WVF3	549 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3I	A0A087WXS9	549 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3E	A0A087X179	549 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3K	A0A087X1G2	549 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TLDC2	A0PJX2	215 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3F	A6NER0	549 aa	Predicted RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	KCNU1	A8MYU2	1149 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3L	B9A6J9	549 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	PLK4	O00444	970 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	MAGEC1	O60732	1142 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TRUB2	O95900	331 aa	Known RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3H	P0C7X1	549 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	SLC2A3	P11169	496 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	MZF1	P28698	734 aa	Predicted RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	ABCG1	P45844	678 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	MTA1	Q13330	715 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	STIM1	Q13586	685 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	ZC3H12A	Q5D1E8	599 aa	Known RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3G	Q6DHY5	549 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3C	Q6IPX1	549 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	RRAGA	Q7L523	313 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	DSG4	Q86SJ6	1040 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	PRPF39	Q86UA1	669 aa	Known RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TAC4	Q86UU9	113 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TRIM69	Q86WT6	500 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TBC1D3	Q8IZP1	549 aa	Predicted RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	EID2	Q8N6I1	236 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	ATP6V0D2	Q8N8Y2	350 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	LSM14A	Q8ND56	463 aa	Known RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	FAM149B1	Q96BN6	582 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	RPL10L	Q96L21	214 aa	Known RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	MED15	Q96RN5	788 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	UBL7	Q96S82	380 aa	Predicted RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	THAP9	Q9H5L6	903 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	TJP2	Q9UDY2	1190 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	SLC12A6	Q9UHW9	1150 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	CYTH4	Q9UIA0	394 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	XPO7	Q9UIA9	1087 aa	Known RBP	11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	LAMA5	O15230	3695 aa		11.89	□□□□□ -0.51
CTNND1-238	ENST00000534647	ASXL3	Q9C0F0	2248 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647		F5H5T6	163 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	GOLGA6L19	H0YKK7	550 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	CAPN9	O14815	690 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	ALOX15B	O15296	676 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	MED7	O43513	233 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	PLRG1	O43660	514 aa	Known RBP	11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	RNGTT	O60942	597 aa	Known RBP	11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	MOCS2	O96007	188 aa	Predicted RBP	11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	IL1B	P01584	269 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	GLI1	P08151	1106 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	CKMT2	P17540	419 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	ACP1	P24666	158 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	PSMD8	P48556	350 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	ZNF165	P49910	485 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	CCDC173	Q0VFZ6	552 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	BNIP3	Q12983	259 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	TARDBP	Q13148	414 aa	Known RBP eCLIP	11.88	□□□□□ -0.51	1e-8	■■■■□ 21.9
CTNND1-238	ENST00000534647	DNAJC3	Q13217	504 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	CCDC157	Q569K6	752 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	FAM46C	Q5VWP2	391 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	RAP1GAP2	Q684P5	730 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	TTI2	Q6NXR4	508 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	SPATS2	Q86XZ4	545 aa	Known RBP	11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	ARHGEF19	Q8IW93	802 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	TRIM59	Q8IWR1	403 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	CCAR2	Q8N163	923 aa	Known RBP	11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	SNIP1	Q8TAD8	396 aa	Known RBP	11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	ADAM32	Q8TC27	787 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	ZNF606	Q8WXB4	792 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	ALG14	Q96F25	216 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	KREMEN1	Q96MU8	473 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	PRORY	Q9H606	182 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	ST7	Q9NRC1	585 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	PPM1H	Q9ULR3	514 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647	CEP83	Q9Y592	693 aa		11.88	□□□□□ -0.51
CTNND1-238	ENST00000534647		A0A1B0GVM2	712 aa		11.87	□□□□□ -0.51
CTNND1-238	ENST00000534647	TCAF2	A6NFQ2	919 aa		11.87	□□□□□ -0.51
CTNND1-238	ENST00000534647	EIF4E1B	A6NMX2	242 aa	Known RBP	11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms