RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SYN3O14994 580 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 STRNO43815 780 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 MYZAPP0CAP1 466 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 PEPDP12955 493 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 CYP4B1P13584 511 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 TNNT1P13805 278 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 GYS1P13807 737 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 KLRC2P26717 231 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 MLH1P40692 756 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 RFX2P48378 723 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 RASSF2P50749 326 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 RPS6KA3P51812 740 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 RHAGQ02094 409 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 CDK18Q07002 472 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 FOXO1Q12778 655 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 TIGD6Q17RP2 521 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 VWA5B1Q5TIE3 1220 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 NUGGCQ68CJ6 796 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 TTLL5Q6EMB2 1281 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 SYNE3Q6ZMZ3 975 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 PALB2Q86YC2 1186 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 FAM217AQ8IXS0 508 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 PTGR2Q8N8N7 351 aaPredicted RBP3.05□□□□□ -1.92
CD44-238ENST00000534296 MYRIPQ8NFW9 859 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 OR6Y1Q8NGX8 325 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 IP6K1Q92551 441 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 KAT2AQ92830 837 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 ARRDC3Q96B67 414 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 ZSCAN31Q96LW9 406 aaPredicted RBP3.05□□□□□ -1.92
CD44-238ENST00000534296 NAP1L4Q99733 375 aaKnown RBP3.05□□□□□ -1.92
CD44-238ENST00000534296 ZPBPQ9BS86 351 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 CADM1Q9BY67 442 aaKnown RBP3.05□□□□□ -1.92
CD44-238ENST00000534296 ISCUQ9H1K1 167 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 SIRT3Q9NTG7 399 aaPredicted RBP3.05□□□□□ -1.92
CD44-238ENST00000534296 WNT16Q9UBV4 365 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 FBXO4Q9UKT5 387 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 FZD10Q9ULW2 581 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 MYO6Q9UM54 1294 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 SUFUQ9UMX1 484 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 DHDHQ9UQ10 334 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 RAP2CQ9Y3L5 183 aa3.05□□□□□ -1.92
CD44-238ENST00000534296 C17orf102A2RUQ5 167 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 OR6C75A6NL08 312 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 TMCC1O94876 653 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 HEXIM1O94992 359 aaKnown RBP3.04□□□□□ -1.92
CD44-238ENST00000534296 TFRCP02786 760 aaKnown RBP3.04□□□□□ -1.92
CD44-238ENST00000534296 MMP3P08254 477 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 PRPH2P23942 346 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 CCKBRP32239 447 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 CLCNKBP51801 687 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 RBM5P52756 815 aaKnown RBP eCLIP3.04□□□□□ -1.92
CD44-238ENST00000534296 EGR4Q05215 589 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 DSC1Q08554 894 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 TRAF2Q12933 501 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 PLK5Q496M5 336 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 GALNTL6Q49A17 601 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 INO80DQ53TQ3 878 aaPredicted RBP3.04□□□□□ -1.92
CD44-238ENST00000534296 DNTTIP2Q5QJE6 756 aaKnown RBP3.04□□□□□ -1.92
CD44-238ENST00000534296 WASHC2DQ5SRD0 308 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 TMEM268Q5VZI3 342 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 NCAPH2Q6IBW4 605 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 TANGO2Q6ICL3 276 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 AADACL2Q6P093 401 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 SLC16A12Q6ZSM3 486 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 Q6ZTK2 550 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 RTL10Q7L3V2 364 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 GALNT7Q86SF2 657 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 ADHFE1Q8IWW8 467 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 CACNA2D3Q8IZS8 1091 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 CADM3Q8N126 398 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 VPS52Q8N1B4 723 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 LRRC57Q8N9N7 239 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 GABPB2Q8TAK5 448 aaPredicted RBP3.04□□□□□ -1.92
CD44-238ENST00000534296 MSI2Q96DH6 328 aaKnown RBP3.04□□□□□ -1.92
CD44-238ENST00000534296 FRG2BQ96QU4 278 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 MEIS3Q99687 375 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 ARHGAP39Q9C0H5 1083 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.04□□□□□ -1.92
CD44-238ENST00000534296 HIPK3Q9H422 1215 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 TAF1DQ9H5J8 278 aaPredicted RBP3.04□□□□□ -1.92
CD44-238ENST00000534296 MAP6D1Q9H9H5 199 aa3.04□□□□□ -1.92
CD44-238ENST00000534296 TCRBV7S3A2A0A539 114 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 MS4A18H0YCH9 400 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 VWA5AO00534 786 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 RNMTO43148 476 aaKnown RBP3.03□□□□□ -1.92
CD44-238ENST00000534296 SMAD6O43541 496 aaKnown RBP3.03□□□□□ -1.92
CD44-238ENST00000534296 HBP1O60381 514 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 HSD3B1P14060 373 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 HOXB2P14652 356 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 ARSBP15848 533 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 HOXD3P31249 432 aaPredicted RBP3.03□□□□□ -1.92
CD44-238ENST00000534296 PNPLA4P41247 253 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 MAPK9P45984 424 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 AARSP49588 968 aaKnown RBP eCLIP3.03□□□□□ -1.92
CD44-238ENST00000534296 PAPOLAP51003 745 aaKnown RBP3.03□□□□□ -1.92
CD44-238ENST00000534296 ZP1P60852 638 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 GALNT1Q10472 559 aaPredicted RBP3.03□□□□□ -1.92
CD44-238ENST00000534296 ERV3-1Q14264 604 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 RRAGAQ7L523 313 aa3.03□□□□□ -1.92
CD44-238ENST00000534296 PELI3Q8N2H9 469 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms