RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 HCAR3P49019 387 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 TPI1P60174 286 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 RPS14P62263 151 aaKnown RBP20.33■□□□□ 0.85
CPSF1-209ENST00000532725 SLC25A11Q02978 314 aaKnown RBP20.33■□□□□ 0.85
CPSF1-209ENST00000532725 SLC20A2Q08357 652 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 TCEAL1Q15170 157 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 DLG2Q15700 870 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 KCNT1Q5JUK3 1230 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 TMTC1Q8IUR5 882 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 RUBCNQ92622 972 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 LOXL4Q96JB6 756 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 ATP13A1Q9HD20 1204 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 IMPACTQ9P2X3 320 aa20.33■□□□□ 0.85
CPSF1-209ENST00000532725 SPAG17Q6Q759 2223 aa20.33■□□□□ 0.84
CPSF1-209ENST00000532725 CXorf51AA0A1B0GTR3 108 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 K7ERQ8 282 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 CBX4O00257 560 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 EEF2KO00418 725 aaKnown RBP20.32■□□□□ 0.84
CPSF1-209ENST00000532725 FGF10O15520 208 aaPredicted RBP20.32■□□□□ 0.84
CPSF1-209ENST00000532725 MTA2O94776 668 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 RHOBTB1O94844 696 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 CD160O95971 181 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 RETP07949 1114 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 SRCP12931 536 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 ETFBP38117 255 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 MAGEA1P43355 309 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 TPMTP51580 245 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 ZNF135P52742 658 aaPredicted RBP20.32■□□□□ 0.84
CPSF1-209ENST00000532725 POLD3Q15054 466 aaPredicted RBP20.32■□□□□ 0.84
CPSF1-209ENST00000532725 DPYSL2Q16555 572 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 ACCSLQ4AC99 568 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 IL31Q6EBC2 164 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 LINGO4Q6UY18 593 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 CPNE8Q86YQ8 564 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 UMODL1-AS1Q8N2C9 162 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 DCLK2Q8N568 766 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 TEKT4Q8WW24 435 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 SPACA7Q96KW9 195 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 ZWILCHQ9H900 591 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 CWC15Q9P013 229 aaKnown RBP20.32■□□□□ 0.84
CPSF1-209ENST00000532725 LCMT1Q9UIC8 334 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 CYP8B1Q9UNU6 501 aa20.32■□□□□ 0.84
CPSF1-209ENST00000532725 EPN1Q9Y6I3 576 aaPredicted RBP20.32■□□□□ 0.84
CPSF1-209ENST00000532725 GVINP1Q7Z2Y8 2422 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 MAP3K13O43283 966 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 SMAD6O43541 496 aaKnown RBP20.31■□□□□ 0.84
CPSF1-209ENST00000532725 RAMP2O60895 175 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 IGLV3-19P01714 112 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 GOT1P17174 413 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 YBEYP58557 167 aaPredicted RBP20.31■□□□□ 0.84
CPSF1-209ENST00000532725 ARF5P84085 180 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 ZBTB16Q05516 673 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 SMTNL2Q2TAL5 461 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 PPP6R3Q5H9R7 873 aaPredicted RBP20.31■□□□□ 0.84
CPSF1-209ENST00000532725 PMS2CLQ68D20 193 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 RETSATQ6NUM9 610 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 RFX8Q6ZV50 586 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.31■□□□□ 0.84
CPSF1-209ENST00000532725 RHOT2Q8IXI1 618 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 STK40Q8N2I9 435 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 ATP11CQ8NB49 1132 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 KLC2Q9H0B6 622 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 PCDHA13Q9Y5I0 950 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 GON4LQ3T8J9 2241 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 ZNF292O60281 2723 aa20.31■□□□□ 0.84
CPSF1-209ENST00000532725 CHD5Q8TDI0 1954 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 SOWAHDA6NJG2 315 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 KDELR3O43731 214 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 ZNF821O75541 412 aaPredicted RBP20.3■□□□□ 0.84
CPSF1-209ENST00000532725 ACADMP11310 421 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 ERCC2P18074 760 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 ARHGAP25P42331 645 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 CLCN6P51797 869 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 ELF2Q15723 593 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 SPDYCQ5MJ68 293 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 ZNF776Q68DI1 518 aaPredicted RBP20.3■□□□□ 0.84
CPSF1-209ENST00000532725 SLC36A4Q6YBV0 504 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 POLNQ7Z5Q5 900 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 SPC24Q8NBT2 197 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 RFFLQ8WZ73 363 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 HSPH1Q92598 858 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 DONSONQ9NYP3 566 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 WSB2Q9NYS7 404 aaPredicted RBP20.3■□□□□ 0.84
CPSF1-209ENST00000532725 NCDNQ9UBB6 729 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 GMEB2Q9UKD1 530 aa20.3■□□□□ 0.84
CPSF1-209ENST00000532725 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 RASA4BC9J798 803 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 DAPK3O43293 454 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 RASA4O43374 803 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 RNASEH1O60930 286 aaKnown RBP20.29■□□□□ 0.84
CPSF1-209ENST00000532725 TGM1P22735 817 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 IL4RP24394 825 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 CD6P30203 668 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 OXTRP30559 389 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 MAN1A1P33908 653 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 CYLC1P35663 651 aaPredicted RBP20.29■□□□□ 0.84
CPSF1-209ENST00000532725 TAS2R40P59535 323 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 DPYSQ14117 519 aa20.29■□□□□ 0.84
CPSF1-209ENST00000532725 ELAVL3Q14576 367 aaKnown RBP20.29■□□□□ 0.84
CPSF1-209ENST00000532725 MESDQ14696 234 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms