RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SLC36A4Q6YBV0 504 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 SH2D3CQ8N5H7 860 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 FRMD1Q8N878 549 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 PTPRN2Q92932 1015 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 BTBD6Q96KE9 485 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 PANX2Q96RD6 677 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 MAGEH1Q9H213 219 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 MTG2Q9H4K7 406 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 DHX35Q9H5Z1 703 aaKnown RBP15.4■□□□□ 0.06
CPSF1-208ENST00000532560 ATP13A1Q9HD20 1204 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 ITM2CQ9NQX7 267 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 NDFIP2Q9NV92 336 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 CTTNBP2NLQ9P2B4 639 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 PCDHGA5Q9Y5G8 931 aa15.4■□□□□ 0.06
CPSF1-208ENST00000532560 RIF1Q5UIP0 2472 aaKnown RBP15.4■□□□□ 0.06
CPSF1-208ENST00000532560 USP34Q70CQ2 3546 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 RAMP2O60895 175 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 ZMPSTE24O75844 475 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 PTMAP06454 111 aaKnown RBP15.39■□□□□ 0.05
CPSF1-208ENST00000532560 ACADMP11310 421 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 SRCP12931 536 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 FECHP22830 423 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 IL1R2P27930 398 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 RPS14P62263 151 aaKnown RBP15.39■□□□□ 0.05
CPSF1-208ENST00000532560 SLC25A11Q02978 314 aaKnown RBP15.39■□□□□ 0.05
CPSF1-208ENST00000532560 ELAVL3Q14576 367 aaKnown RBP15.39■□□□□ 0.05
CPSF1-208ENST00000532560 DPYSL2Q16555 572 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 BOLA3Q53S33 107 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 DAB2IPQ5VWQ8 1189 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 LPCAT2Q7L5N7 544 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 CACUL1Q86Y37 369 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 ARHGEF2Q92974 986 aaKnown RBP15.39■□□□□ 0.05
CPSF1-208ENST00000532560 KCTD15Q96SI1 283 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-208ENST00000532560 ACE2Q9BYF1 805 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-208ENST00000532560 CD93Q9NPY3 652 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 DONSONQ9NYP3 566 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 DNAI1Q9UI46 699 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 INTUQ9ULD6 942 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 SCML1Q9UN30 329 aa15.39■□□□□ 0.05
CPSF1-208ENST00000532560 GOLGA6L6A8MZA4 724 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 CBX4O00257 560 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 EEF2KO00418 725 aaKnown RBP15.38■□□□□ 0.05
CPSF1-208ENST00000532560 MAP3K13O43283 966 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 RNASEH1O60930 286 aaKnown RBP15.38■□□□□ 0.05
CPSF1-208ENST00000532560 MT-CO1P00395 513 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 TCF4P15884 667 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 GLDCP23378 1020 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 CD6P30203 668 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 CDC25BP30305 580 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 OXTRP30559 389 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 ACVRL1P37023 503 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 RPL6Q02878 288 aaKnown RBP15.38■□□□□ 0.05
CPSF1-208ENST00000532560 SLC20A2Q08357 652 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 DLG2Q15700 870 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 TTC31Q49AM3 519 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-208ENST00000532560 RETSATQ6NUM9 610 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 RFX8Q6ZV50 586 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 CCDC170Q8IYT3 715 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 DCLK2Q8N568 766 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 GPR161Q8N6U8 529 aaKnown RBP15.38■□□□□ 0.05
CPSF1-208ENST00000532560 ATP11CQ8NB49 1132 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 TEKT4Q8WW24 435 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 SPON2Q9BUD6 331 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 NOL6Q9H6R4 1146 aaKnown RBP15.38■□□□□ 0.05
CPSF1-208ENST00000532560 WSB2Q9NYS7 404 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-208ENST00000532560 EP300Q09472 2414 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-208ENST00000532560 GVINP1Q7Z2Y8 2422 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 ABCA7Q8IZY2 2146 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 THADAQ6YHU6 1953 aa15.38■□□□□ 0.05
CPSF1-208ENST00000532560 BCLAF3A2AJT9 711 aaKnown RBP15.37■□□□□ 0.05
CPSF1-208ENST00000532560 ALOX15BO15296 676 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 MTA2O94776 668 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 PROSCO94903 275 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 LCA5LO95447 670 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 DNTTP04053 509 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 VAV1P15498 845 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 MAN1A1P33908 653 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 HCAR3P49019 387 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 SERPINH1P50454 418 aaKnown RBP15.37■□□□□ 0.05
CPSF1-208ENST00000532560 GEMIN4P57678 1058 aaKnown RBP15.37■□□□□ 0.05
CPSF1-208ENST00000532560 YBEYP58557 167 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-208ENST00000532560 ARF5P84085 180 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 POLD3Q15054 466 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-208ENST00000532560 CST6Q15828 149 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 SMTNL2Q2TAL5 461 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 PARP15Q460N3 678 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 ACCSLQ4AC99 568 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 IL31Q6EBC2 164 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 C22orf39Q6P5X5 142 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 LINGO4Q6UY18 593 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 Q6ZVU0 165 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 USP30Q70CQ3 517 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 RHOT2Q8IXI1 618 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 UMODL1-AS1Q8N2C9 162 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 STK40Q8N2I9 435 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 RFFLQ8WZ73 363 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 OR8D1Q8WZ84 308 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 FAM129BQ96TA1 746 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 CEP44Q9C0F1 390 aa15.37■□□□□ 0.05
CPSF1-208ENST00000532560 PABPC3Q9H361 631 aaKnown RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms