RNA–Protein interactions for RNA: ENST00000531551.5

CTSB-222, Transcript of cathepsin B, human

TSL 1 (best)

Gene CTSB, Length 1,855 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSB-222	ENST00000531551	PRRT4	C9JH25	899 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	KDELR3	O43731	214 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	GRIA2	P42262	883 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	CKAP4	Q07065	602 aa	Known RBP	18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	TUBB2A	Q13885	445 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	FAM182A	Q5T1J6	154 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	TMEM215	Q68D42	235 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	NUDT18	Q6ZVK8	323 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	ADIPOR2	Q86V24	386 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	18.03	■□□□□ 0.48	5e-6	■■□□□ 13.3
CTSB-222	ENST00000531551	DCAF4L2	Q8NA75	395 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	WFIKKN2	Q8TEU8	576 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	SORCS1	Q8WY21	1168 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	EXOC4	Q96A65	974 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	HDAC11	Q96DB2	347 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	TUBB2B	Q9BVA1	445 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	VPS51	Q9UID3	782 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	ZNF148	Q9UQR1	794 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	ACTL7A	Q9Y615	435 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	TICRR	Q7Z2Z1	1910 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	LIAS	O43766	372 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	MAFK	O60675	156 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	CTSO	P43234	321 aa	Predicted RBP	18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	PLK1	P53350	603 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	BYSL	Q13895	437 aa	Known RBP	18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	DMC1	Q14565	340 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	MLF2	Q15773	248 aa	Predicted RBP	18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	CCNG2	Q16589	344 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	CCDC13	Q8IYE1	715 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	PHTF2	Q8N3S3	785 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	CYB5D2	Q8WUJ1	264 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	FAM3C	Q92520	227 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	RPL10L	Q96L21	214 aa	Known RBP	18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	HOMER3	Q9NSC5	361 aa		18.03	■□□□□ 0.48
CTSB-222	ENST00000531551	MYO10	Q9HD67	2058 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	DOCK4	Q8N1I0	1966 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	GLUL	P15104	373 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	RBL1	P28749	1068 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	KCNJ1	P48048	391 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	ARF5	P84085	180 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	PPID	Q08752	370 aa	Known RBP	18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	XRCC4	Q13426	336 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	RETSAT	Q6NUM9	610 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	LRRC49	Q8IUZ0	686 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	CDKL3	Q8IVW4	592 aa	Predicted RBP	18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	KLHL7	Q8IXQ5	586 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	USP33	Q8TEY7	942 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	NSMCE1	Q8WV22	266 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	ACD	Q96AP0	544 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	CCDC114	Q96M63	670 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	ARHGEF3	Q9NR81	526 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	ELOVL2	Q9NXB9	296 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	SLC25A13	Q9UJS0	675 aa		18.02	■□□□□ 0.48
CTSB-222	ENST00000531551	HACD1	B0YJ81	288 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	KCNK1	O00180	336 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	PRAMEF11	O60813	436 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	ATP5B	P06576	529 aa	Known RBP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	CCNC	P24863	283 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	SEC13	P55735	322 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	ECT2L	Q008S8	904 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	IL10RB	Q08334	325 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	C2orf54	Q08AI8	447 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	GRSF1	Q12849	480 aa	Known RBP eCLIP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	SLC45A4	Q5BKX6	768 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	HEATR6	Q6AI08	1181 aa	Known RBP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	TIGD7	Q6NT04	549 aa	Predicted RBP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	UBALD2	Q8IYN6	164 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	SPATA4	Q8NEY3	305 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	SLC35B2	Q8TB61	432 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	QKI	Q96PU8	341 aa	Known RBP eCLIP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	UHRF1	Q96T88	793 aa	Predicted RBP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	TMEM121	Q9BTD3	319 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	CEP41	Q9BYV8	373 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	BRD8	Q9H0E9	1235 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	DDX47	Q9H0S4	455 aa	Known RBP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	UBA2	Q9UBT2	640 aa	Predicted RBP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	NDRG2	Q9UN36	371 aa	Known RBP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	COL4A3	Q01955	1670 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	KCNN4	O15554	427 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	PHF2	O75151	1096 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	NEBL	O76041	1014 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	VAV1	P15498	845 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	STK19	P49842	368 aa	Predicted RBP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	SULT2A1	Q06520	285 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	CCDC105	Q8IYK2	499 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	ATP11C	Q8NB49	1132 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	HTR3C	Q8WXA8	447 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	MSANTD3	Q96H12	275 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	FERMT1	Q9BQL6	677 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	ZDHHC4	Q9NPG8	344 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	RBM12	Q9NTZ6	932 aa	Known RBP	18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	WNT16	Q9UBV4	365 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	PLA2G4C	Q9UP65	541 aa		18.01	■□□□□ 0.47
CTSB-222	ENST00000531551	MAN2B1	O00754	1011 aa		18	■□□□□ 0.47
CTSB-222	ENST00000531551	ZMPSTE24	O75844	475 aa		18	■□□□□ 0.47
CTSB-222	ENST00000531551	MT-CO1	P00395	513 aa		18	■□□□□ 0.47
CTSB-222	ENST00000531551	EGF	P01133	1207 aa		18	■□□□□ 0.47
CTSB-222	ENST00000531551	PRKD1	Q15139	912 aa	Predicted RBP	18	■□□□□ 0.47

Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms