RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 VPS36Q86VN1 386 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 FAM228AQ86W67 206 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 ANKRD44Q8N8A2 993 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 BBOF1Q8ND07 529 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 KIFAP3Q92845 792 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 PEX13Q92968 403 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 CAVIN3Q969G5 261 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 IQCDQ96DY2 449 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 VPS50Q96JG6 964 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 RPRD1AQ96P16 312 aaPredicted RBP5.86□□□□□ -1.47
CD44-231ENST00000531110 RBM14Q96PK6 669 aaKnown RBP5.86□□□□□ -1.47
CD44-231ENST00000531110 CDRT15Q96T59 188 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 MESP1Q9BRJ9 268 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 TTPALQ9BTX7 342 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 TIPINQ9BVW5 301 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 FAM129AQ9BZQ8 928 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 GBA3Q9H227 469 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 PLEKHA5Q9HAU0 1116 aa5.86□□□□□ -1.47
CD44-231ENST00000531110 SAMSN1Q9NSI8 373 aaKnown RBP5.86□□□□□ -1.47
CD44-231ENST00000531110 MRPS18AQ9NVS2 196 aaKnown RBP5.86□□□□□ -1.47
CD44-231ENST00000531110 AGO2Q9UKV8 859 aaKnown RBP5.86□□□□□ -1.47
CD44-231ENST00000531110 RPL26L1Q9UNX3 145 aaKnown RBP5.86□□□□□ -1.47
CD44-231ENST00000531110 RRP7AQ9Y3A4 280 aaKnown RBP5.86□□□□□ -1.47
CD44-231ENST00000531110 CFAP43Q8NDM7 1665 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 ITSN2Q9NZM3 1697 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 NRXN1Q9ULB1 1477 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 MSH6P52701 1360 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 CDHR2Q9BYE9 1310 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 LOC105371267A0A1B0GV96 52 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 PVALEFA0A1B0GWK0 134 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 MBD3L4A6NDZ8 208 aaPredicted RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 MBD3L3A6NE82 208 aaPredicted RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 OR5K4A6NMS3 321 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 F5H697 171 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 GOLGA8MH3BSY2 632 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 DCLK1O15075 740 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 TBX3O15119 743 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SLC22A1O15245 554 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 RNMTO43148 476 aaKnown RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 PEX1O43933 1283 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 TBC1D4O60343 1298 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 LCA5LO95447 670 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 PAHP00439 452 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 APOEP02649 317 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 CLTAP09496 248 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 KITP10721 976 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 KRT13P13646 458 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 PHKG2P15735 406 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 ZKSCAN1P17029 563 aaPredicted RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 TYRP1P17643 537 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 EIF2S2P20042 333 aaKnown RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 PROZP22891 400 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 PEX2P28328 305 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 HMOX2P30519 316 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 LRPAP1P30533 357 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 CETN2P41208 172 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 KRT6CP48668 564 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SSTP61278 116 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 MRPS15P82914 257 aaKnown RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 PLOD1Q02809 727 aaPredicted RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 RIPPLY1Q0D2K3 151 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 GALNT1Q10472 559 aaPredicted RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 STK4Q13043 487 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SLC13A2Q13183 592 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 ITGA9Q13797 1035 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SQLEQ14534 574 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 LLGL1Q15334 1064 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 CNGA2Q16280 664 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 CEP78Q5JTW2 689 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 TEDDM1Q5T9Z0 273 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 GKAP1Q5VSY0 366 aaPredicted RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 TMEM57Q8N5G2 664 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 CCDC148Q8NFR7 591 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 FAM149B1Q96BN6 582 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 TRIM43Q96BQ3 446 aaPredicted RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 CHFRQ96EP1 664 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SLC39A13Q96H72 371 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 ZC3H10Q96K80 434 aaKnown RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 CEP295NLQ96MC4 621 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SLC46A1Q96NT5 459 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 TUBA1CQ9BQE3 449 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 PTDSS2Q9BVG9 487 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 ALG8Q9BVK2 526 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SARGQ9BW04 601 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 APOL5Q9BWW9 433 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 ZNF700Q9H0M5 742 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 NUP62CLQ9H1M0 184 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 TPK1Q9H3S4 243 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SMOC2Q9H3U7 446 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 PSTPIP2Q9H939 334 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SLC38A10Q9HBR0 1119 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 XAB2Q9HCS7 855 aaKnown RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 RIC8AQ9NPQ8 531 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 ATP8A2Q9NTI2 1148 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 FAIMQ9NVQ4 179 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 AFF4Q9UHB7 1163 aaKnown RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 PA2G4Q9UQ80 394 aaKnown RBP5.85□□□□□ -1.47
CD44-231ENST00000531110 DMRT1Q9Y5R6 373 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 SNX8Q9Y5X2 465 aa5.85□□□□□ -1.47
CD44-231ENST00000531110 CLTCL1P53675 1640 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms