RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 ACAP1Q15027 740 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 SF3A2Q15428 464 aaKnown RBP9.95□□□□□ -0.82
RNF4-221ENST00000513643 DLG2Q15700 870 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 LYSMD4Q5XG99 296 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 ZNF776Q68DI1 518 aaPredicted RBP9.95□□□□□ -0.82
RNF4-221ENST00000513643 ALKBH5Q6P6C2 394 aaKnown RBP9.95□□□□□ -0.82
RNF4-221ENST00000513643 SLC23A3Q6PIS1 610 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 KIAA1324Q6UXG2 1013 aaKnown RBP9.95□□□□□ -0.82
RNF4-221ENST00000513643 TFAP2DQ7Z6R9 452 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 GAS2L3Q86XJ1 694 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 PLPP6Q8IY26 295 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 UMODL1-AS1Q8N2C9 162 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 NIPA2Q8N8Q9 360 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 ARHGEF2Q92974 986 aaKnown RBP9.95□□□□□ -0.82
RNF4-221ENST00000513643 EIF3CQ99613 913 aaKnown RBP9.95□□□□□ -0.82
RNF4-221ENST00000513643 ORAI3Q9BRQ5 295 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 C2orf49Q9BVC5 232 aaPredicted RBP9.95□□□□□ -0.82
RNF4-221ENST00000513643 KLC2Q9H0B6 622 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 THAP2Q9H0W7 228 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 PABPC3Q9H361 631 aaKnown RBP9.95□□□□□ -0.82
RNF4-221ENST00000513643 CAPN10Q9HC96 672 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 VPS28Q9UK41 221 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.95□□□□□ -0.82
RNF4-221ENST00000513643 SCINQ9Y6U3 715 aa9.95□□□□□ -0.82
RNF4-221ENST00000513643 NUP205Q92621 2012 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 TNRC6BQ9UPQ9 1833 aaKnown RBP9.94□□□□□ -0.82
RNF4-221ENST00000513643 ANKRD62A6NC57 917 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 K7ERQ8 282 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 CDX4O14627 284 aaPredicted RBP9.94□□□□□ -0.82
RNF4-221ENST00000513643 SLC30A4O14863 429 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 MAP3K13O43283 966 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 SMAD6O43541 496 aaKnown RBP9.94□□□□□ -0.82
RNF4-221ENST00000513643 GDF9O60383 454 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 GLDCP23378 1020 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 PSMA2P25787 234 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 MIPP30301 263 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 ACSL1P33121 698 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 DRD3P35462 400 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 EIF4A3P38919 411 aaKnown RBP9.94□□□□□ -0.82
RNF4-221ENST00000513643 HCAR3P49019 387 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 DHPSP49366 369 aaPredicted RBP9.94□□□□□ -0.82
RNF4-221ENST00000513643 GALCP54803 685 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 KRT83P78385 493 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 CREB5Q02930 508 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 CST6Q15828 149 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 CCDC6Q16204 474 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 SLC18A3Q16572 532 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 CA9Q16790 459 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 AFMIDQ63HM1 303 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 STK40Q8N2I9 435 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 AADATQ8N5Z0 425 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 RTL3Q8N8U3 475 aaKnown RBP9.94□□□□□ -0.82
RNF4-221ENST00000513643 OR7D4Q8NG98 312 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 OR2A12Q8NGT7 310 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 FOXJ1Q92949 421 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 ISG20Q96AZ6 181 aaKnown RBP9.94□□□□□ -0.82
RNF4-221ENST00000513643 ZNF653Q96CK0 615 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 TBC1D31Q96DN5 1066 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 ARHGEF26Q96DR7 871 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 HINFPQ9BQA5 517 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 RBSNQ9H1K0 784 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 MAGEH1Q9H213 219 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 SMOC1Q9H4F8 434 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 SGK2Q9HBY8 427 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 MRPL47Q9HD33 250 aaKnown RBP9.94□□□□□ -0.82
RNF4-221ENST00000513643 OSGEPQ9NPF4 335 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 ABHD10Q9NUJ1 306 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 SERGEFQ9UGK8 458 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 USP18Q9UMW8 372 aa9.94□□□□□ -0.82
RNF4-221ENST00000513643 CABIN1Q9Y6J0 2220 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 LNP1A1A4G5 178 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 PATE3B3GLJ2 98 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 RNF103O00237 685 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 MID1O15344 667 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 MFAP3LO75121 409 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 CTSLP07711 333 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 C5AR1P21730 350 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 SDHBP21912 280 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 IL1R2P27930 398 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 SLC8A1P32418 973 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 ACVRL1P37023 503 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 ETFBP38117 255 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 NNMTP40261 264 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 SERPINH1P50454 418 aaKnown RBP9.93□□□□□ -0.82
RNF4-221ENST00000513643 YBEYP58557 167 aaPredicted RBP9.93□□□□□ -0.82
RNF4-221ENST00000513643 IRX4P78413 519 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 PUM1Q14671 1186 aaKnown RBP eCLIP9.93□□□□□ -0.82
RNF4-221ENST00000513643 TCEAL1Q15170 157 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 RSPO4Q2I0M5 234 aaPredicted RBP9.93□□□□□ -0.82
RNF4-221ENST00000513643 TDRD12Q587J7 1177 aaKnown RBP9.93□□□□□ -0.82
RNF4-221ENST00000513643 EFHC2Q5JST6 749 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 ERMARDQ5T6L9 678 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 TCEAL6Q6IPX3 200 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 SCYL2Q6P3W7 929 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 CYP2U1Q7Z449 544 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 VPS36Q86VN1 386 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 MMAAQ8IVH4 418 aaKnown RBP9.93□□□□□ -0.82
RNF4-221ENST00000513643 DEFB119Q8N690 84 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 TMIEQ8NEW7 156 aa9.93□□□□□ -0.82
RNF4-221ENST00000513643 CEP76Q8TAP6 659 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms