RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 ATL3Q6DD88 541 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 CAPRIN2Q6IMN6 1127 aaKnown RBP9.42□□□□□ -0.9
NUP54-211ENST00000512151 DSG4Q86SJ6 1040 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 KDM1BQ8NB78 822 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 C9orf43Q8TAL5 461 aaPredicted RBP9.42□□□□□ -0.9
NUP54-211ENST00000512151 FIBINQ8TAL6 211 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 IFT43Q96FT9 208 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 PPP1R13BQ96KQ4 1090 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 RPL10LQ96L21 214 aaKnown RBP9.42□□□□□ -0.9
NUP54-211ENST00000512151 PRICKLE1Q96MT3 831 aaPredicted RBP9.42□□□□□ -0.9
NUP54-211ENST00000512151 CLIC6Q96NY7 704 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 BOCQ9BWV1 1114 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 GPR27Q9NS67 375 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 SEPT10Q9P0V9 454 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 SFMBT1Q9UHJ3 866 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 SALL4Q9UJQ4 1053 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 ATP6V1DQ9Y5K8 247 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 SDK2Q58EX2 2172 aa9.42□□□□□ -0.9
NUP54-211ENST00000512151 HIVEP3Q5T1R4 2406 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 A0A1W2PQU0 124 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 FRMD3A2A2Y4 597 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 C9orf172C9J069 976 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 SPTLC2O15270 562 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 SLC7A4O43246 635 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 PPP6R2O75170 966 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 KIF20AO95235 890 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 CLDN1O95832 211 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 CSF2P04141 144 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 NME1P15531 152 aaKnown RBP9.41□□□□□ -0.9
NUP54-211ENST00000512151 DEKP35659 375 aaKnown RBP9.41□□□□□ -0.9
NUP54-211ENST00000512151 HNRNPKP61978 463 aaKnown RBP eCLIP9.41□□□□□ -0.97e-6■□□□□ 8.5
NUP54-211ENST00000512151 YWHAGP61981 247 aaKnown RBP eCLIP9.41□□□□□ -0.9
NUP54-211ENST00000512151 RPS24P62847 133 aaKnown RBP9.41□□□□□ -0.9
NUP54-211ENST00000512151 FHL5Q5TD97 284 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 NADSYN1Q6IA69 706 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 CLEC17AQ6ZS10 378 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 Q6ZSR6 202 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 ABI3BPQ7Z7G0 1075 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 ATCAYQ86WG3 371 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 MFN1Q8IWA4 741 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 APCDD1Q8J025 514 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 RASSF8Q8NHQ8 419 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 SPOCK2Q92563 424 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 USP7Q93009 1102 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 CYFIP2Q96F07 1278 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 BMFQ96LC9 184 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 TCEAL2Q9H3H9 227 aaPredicted RBP9.41□□□□□ -0.9
NUP54-211ENST00000512151 CFAP45Q9UL16 551 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 PCDHA7Q9UN72 937 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 ZFR2Q9UPR6 939 aaKnown RBP9.41□□□□□ -0.9
NUP54-211ENST00000512151 DAAM1Q9Y4D1 1078 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 LOXL2Q9Y4K0 774 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 SRPRBQ9Y5M8 271 aaKnown RBP9.41□□□□□ -0.9
NUP54-211ENST00000512151 CSNK1G3Q9Y6M4 447 aa9.41□□□□□ -0.9
NUP54-211ENST00000512151 MORC2Q9Y6X9 1032 aaPredicted RBP9.41□□□□□ -0.9
NUP54-211ENST00000512151 A0A1W2PQM1 296 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 D6RAR5 112 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 RNF103O00237 685 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 SPINT1O43278 529 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 TGFB1I1O43294 461 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 AQP9O43315 295 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 PHACTR2O75167 634 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 GCATO75600 419 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 PRKCGP05129 697 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 SRPRAP08240 638 aaKnown RBP9.4□□□□□ -0.9
NUP54-211ENST00000512151 IDEP14735 1019 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 ASPAP45381 313 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 CYP2J2P51589 502 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 ZNF445P59923 1031 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 CCL7P80098 99 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 EIF3IQ13347 325 aaKnown RBP9.4□□□□□ -0.9
NUP54-211ENST00000512151 ALCAMQ13740 583 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 NCOA4Q13772 614 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 ELAVL3Q14576 367 aaKnown RBP9.4□□□□□ -0.9
NUP54-211ENST00000512151 MPP7Q5T2T1 576 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 PIP5KL1Q5T9C9 394 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 C1QL3Q5VWW1 255 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 SPOPLQ6IQ16 392 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 PTAR1Q7Z6K3 402 aaPredicted RBP9.4□□□□□ -0.9
NUP54-211ENST00000512151 UNC93AQ86WB7 457 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 RBFAQ8N0V3 343 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 LMX1AQ8TE12 382 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 FRS2Q8WU20 508 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 EPSTI1Q96J88 318 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 SPATA32Q96LK8 384 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 DUSP16Q9BY84 665 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 KIAA1586Q9HCI6 787 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 NCKIPSDQ9NZQ3 722 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 PNMA8BQ9ULN7 279 aaPredicted RBP9.4□□□□□ -0.9
NUP54-211ENST00000512151 HBS1LQ9Y450 684 aaKnown RBP9.4□□□□□ -0.9
NUP54-211ENST00000512151 ESPL1Q14674 2120 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 UNC13CQ8NB66 2214 aa9.4□□□□□ -0.9
NUP54-211ENST00000512151 NF1P21359 2839 aa9.4□□□□□ -0.91
NUP54-211ENST00000512151 POM121BA6NF01 834 aa9.39□□□□□ -0.91
NUP54-211ENST00000512151 WIPF3A6NGB9 483 aa9.39□□□□□ -0.91
NUP54-211ENST00000512151 K7EM74 188 aa9.39□□□□□ -0.91
NUP54-211ENST00000512151 CLIC2O15247 247 aa9.39□□□□□ -0.91
NUP54-211ENST00000512151 RAD51BO15315 384 aa9.39□□□□□ -0.91
NUP54-211ENST00000512151 GADD45BO75293 160 aaPredicted RBP9.39□□□□□ -0.91
NUP54-211ENST00000512151 CLSTN1O94985 981 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms