RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 TUBGCP4Q9UGJ1 667 aa4.9□□□□□ -1.63
NUP54-206ENST00000508465 MUTYHQ9UIF7 546 aa4.9□□□□□ -1.63
NUP54-206ENST00000508465 KCNG1Q9UIX4 513 aa4.9□□□□□ -1.63
NUP54-206ENST00000508465 CFAP45Q9UL16 551 aa4.9□□□□□ -1.63
NUP54-206ENST00000508465 FAM50BQ9Y247 325 aa4.9□□□□□ -1.63
NUP54-206ENST00000508465 TTC26A0AVF1 554 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 LOC730098B7Z3J9 87 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 PI4K2BG5E9Z4 385 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 H0YCG3 227 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 PODXLO00592 558 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 HOXA3O43365 443 aaPredicted RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 TGM5O43548 720 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 FAM189A1O60320 539 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 ERBB2P04626 1255 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 SRGAP2BP0DMP2 458 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 HOXB8P17481 243 aaPredicted RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 GAP43P17677 238 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 KIF11P52732 1056 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 ASIC1P78348 528 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 NTHL1P78549 312 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 CUL4BQ13620 913 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 ZBTB6Q15916 424 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 PSMD5Q16401 504 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 ATAT1Q5SQI0 421 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 L1TD1Q5T7N2 865 aaKnown RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 PRAMEF9Q5VWM5 478 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 RESP18Q5W5W9 173 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 JADE1Q6IE81 842 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 CRELD2Q6UXH1 353 aaPredicted RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 Q6YL49 198 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 CXorf67Q86X51 503 aaPredicted RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 NELFCDQ8IXH7 590 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 CCDC65Q8IXS2 484 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 RNF168Q8IYW5 571 aaPredicted RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 GLB1L3Q8NCI6 653 aaPredicted RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 KCNG4Q8TDN1 519 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 RSPH1Q8WYR4 309 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 POMGNT1Q8WZA1 660 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 PAGE5Q96GU1 130 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 C7orf25Q9BPX7 421 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 PHF7Q9BWX1 381 aaPredicted RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 SMOC2Q9H3U7 446 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 SERHL2Q9H4I8 314 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 MAN1C1Q9NR34 630 aa4.89□□□□□ -1.63
NUP54-206ENST00000508465 TOPORSQ9NS56 1045 aaPredicted RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 AGO2Q9UKV8 859 aaKnown RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 MORC2Q9Y6X9 1032 aaPredicted RBP4.89□□□□□ -1.63
NUP54-206ENST00000508465 SF3B1O75533 1304 aaKnown RBP eCLIP4.89□□□□□ -1.634e-6■■■■■ 34.5
NUP54-206ENST00000508465 WDR87Q6ZQQ6 2873 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 TRIP11Q15643 1979 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 CENPVL1A0A0U1RR11 272 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 FRMD3A2A2Y4 597 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 C2CD4DB7Z1M9 353 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 CLIC2O15247 247 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 CCL16O15467 120 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 TRAPPC3O43617 180 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 FSBPO95073 299 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 SEC24AO95486 1093 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 GLUD1P00367 558 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 PIGRP01833 764 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 CYP17A1P05093 508 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 HNRNPLP14866 589 aaKnown RBP eCLIP4.88□□□□□ -1.63
NUP54-206ENST00000508465 PFKFB1P16118 471 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 CMA1P23946 247 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 RPL9P32969 192 aaKnown RBP4.88□□□□□ -1.63
NUP54-206ENST00000508465 MTHFRP42898 656 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 CLK3P49761 638 aaKnown RBP4.88□□□□□ -1.63
NUP54-206ENST00000508465 CYP2J2P51589 502 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 NDUFA8P51970 172 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 TFAMQ00059 246 aaKnown RBP4.88□□□□□ -1.63
NUP54-206ENST00000508465 AMPD3Q01432 767 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 ITIH3Q06033 890 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 BECN1Q14457 450 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 TMEM132DQ14C87 1099 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 SPATA1Q5VX52 437 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 ATL3Q6DD88 541 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 DSTYKQ6XUX3 929 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 GRASPQ7Z6J2 395 aaPredicted RBP4.88□□□□□ -1.63
NUP54-206ENST00000508465 GPR149Q86SP6 731 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 CEP57L1Q8IYX8 460 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 FSIP1Q8NA03 581 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 RSAD2Q8WXG1 361 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 SMG7Q92540 1137 aaKnown RBP4.88□□□□□ -1.63
NUP54-206ENST00000508465 CAVIN3Q969G5 261 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 ZNF707Q96C28 371 aaPredicted RBP4.88□□□□□ -1.63
NUP54-206ENST00000508465 RIPOR3Q96MK2 946 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 UROC1Q96N76 676 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 DCLRE1CQ96SD1 692 aaKnown RBP4.88□□□□□ -1.63
NUP54-206ENST00000508465 CBWD1Q9BRT8 395 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 LRFN3Q9BTN0 628 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 OSBPL6Q9BZF3 934 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 TRIM9Q9C026 710 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 GOLPH3LQ9H4A5 285 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 ST6GALNAC4Q9H4F1 302 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 PLEKHA5Q9HAU0 1116 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 PDE11AQ9HCR9 933 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 SLC38A7Q9NVC3 462 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 HCFC1R1Q9NWW0 138 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 DPP3Q9NY33 737 aa4.88□□□□□ -1.63
NUP54-206ENST00000508465 FNIP2Q9P278 1114 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms