RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 URGCPQ8TCY9 931 aa12.22□□□□□ -0.45
NUP54-202ENST00000502850 FCRL5Q96RD9 977 aa12.22□□□□□ -0.45
NUP54-202ENST00000502850 ADAM2Q99965 735 aa12.22□□□□□ -0.45
NUP54-202ENST00000502850 MLPHQ9BV36 600 aaPredicted RBP12.22□□□□□ -0.45
NUP54-202ENST00000502850 MRM3Q9HC36 420 aaKnown RBP12.22□□□□□ -0.45
NUP54-202ENST00000502850 ANLNQ9NQW6 1124 aa12.22□□□□□ -0.45
NUP54-202ENST00000502850 FBXO6Q9NRD1 293 aaPredicted RBP12.22□□□□□ -0.45
NUP54-202ENST00000502850 TMEM30AQ9NV96 361 aa12.22□□□□□ -0.45
NUP54-202ENST00000502850 ARL8BQ9NVJ2 186 aa12.22□□□□□ -0.45
NUP54-202ENST00000502850 COPG2Q9UBF2 871 aa12.22□□□□□ -0.45
NUP54-202ENST00000502850 CACNG4Q9UBN1 327 aa12.22□□□□□ -0.45
NUP54-202ENST00000502850 EMCNQ9ULC0 261 aa12.22□□□□□ -0.45
NUP54-202ENST00000502850 ZCWPW2A0A1B0GU75 182 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 A8MUI8 341 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 SPECC1L-ADORA2AF8WAN1 911 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 TMEM189-UBE2V1I3L0A0 370 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 I6L893 689 aaPredicted RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 KLHL2O95198 593 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 EOMESO95936 686 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 JCHAINP01591 159 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 FGF3P11487 239 aaPredicted RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 PAMP19021 973 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 CD68P34810 354 aaPredicted RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 BRCC3P46736 316 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 GJA8P48165 433 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 SLC1A6P48664 564 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 AFF1P51825 1210 aaKnown RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 ILF2Q12905 390 aaKnown RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 EIF4EBP2Q13542 120 aaPredicted RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 PCLAFQ15004 111 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 ZRSR2Q15696 482 aaKnown RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 NFE2Q16621 373 aaPredicted RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 ACBD5Q5T8D3 534 aaPredicted RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 C6orf163Q5TEZ5 329 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 RWDD4Q6NW29 188 aaKnown RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 GLB1LQ6UWU2 654 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 TMPRSS6Q8IU80 811 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 UNC5BQ8IZJ1 945 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 DCLK2Q8N568 766 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 KLHDC9Q8NEP7 349 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 PPHLN1Q8NEY8 458 aaKnown RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 DPF3Q92784 378 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 FUBP3Q96I24 572 aaKnown RBP eCLIP12.21□□□□□ -0.46
NUP54-202ENST00000502850 RILPQ96NA2 401 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 GORASP1Q9BQQ3 440 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 KIFC1Q9BW19 673 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 NMUR2Q9GZQ4 415 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 DCLRE1BQ9H816 532 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 C20orf96Q9NUD7 363 aaPredicted RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 DNAJC28Q9NX36 388 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 TAGLN3Q9UI15 199 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 APOBEC2Q9Y235 224 aaKnown RBP12.21□□□□□ -0.46
NUP54-202ENST00000502850 CDY1Q9Y6F8 540 aa12.21□□□□□ -0.46
NUP54-202ENST00000502850 MATN3O15232 486 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 GSC2O15499 205 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 MGEA5O60502 916 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 MAGEC1O60732 1142 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 NEBLO76041 1014 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 INHAP05111 366 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 RALBP11234 206 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 CPA3P15088 417 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 GRIK1P39086 918 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 SLC5A3P53794 718 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 RPL10AP62906 217 aaKnown RBP12.2□□□□□ -0.46
NUP54-202ENST00000502850 MTA1Q13330 715 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 PCID2Q5JVF3 399 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 TEDDM1Q5T9Z0 273 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 MANEALQ5VSG8 457 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 POTEHQ6S545 545 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 FAM43BQ6ZT52 329 aaPredicted RBP12.2□□□□□ -0.46
NUP54-202ENST00000502850 TEX9Q8N6V9 391 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 OR10T2Q8NGX3 314 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 FATE1Q969F0 183 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 FCRL3Q96P31 734 aaPredicted RBP12.2□□□□□ -0.46
NUP54-202ENST00000502850 NUDCD1Q96RS6 583 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 IL12RB2Q99665 862 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 TBL1YQ9BQ87 522 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 PAAF1Q9BRP4 392 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 CADM1Q9BY67 442 aaKnown RBP12.2□□□□□ -0.46
NUP54-202ENST00000502850 PRKD2Q9BZL6 878 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 UNC93B1Q9H1C4 597 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 C1orf21Q9H246 121 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 FBXO44Q9H4M3 255 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 YY1AP1Q9H869 796 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 ENTPD7Q9NQZ7 604 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 TBC1D13Q9NVG8 400 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 PIH1D1Q9NWS0 290 aaKnown RBP12.2□□□□□ -0.46
NUP54-202ENST00000502850 INPP5FQ9Y2H2 1132 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 PSAT1Q9Y617 370 aa12.2□□□□□ -0.46
NUP54-202ENST00000502850 A0A096LPK6 155 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 WASH4PA8MWX3 477 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 CAPN14A8MX76 684 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 DFFAO00273 331 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 ATP9BO43861 1147 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 PEX11AO75192 247 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 SNUPNO95149 360 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 LUC7L3O95232 432 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 SLC34A2O95436 690 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 COL6A2P12110 1019 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 ALOX15P16050 662 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms