RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 RASA4BC9J798 803 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 DFFAO00273 331 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 RASA4O43374 803 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 ZRANB2O95218 330 aaKnown RBP eCLIP16.1■□□□□ 0.17
C9orf3-219ENST00000488186 SERPINB6P35237 376 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 IL12RB1P42701 662 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 ARSEP51690 589 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 GEMIN4P57678 1058 aaKnown RBP16.1■□□□□ 0.17
C9orf3-219ENST00000488186 SLC20A2Q08357 652 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 CRY1Q16526 586 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 ZNF662Q6ZS27 426 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 RFX6Q8HWS3 928 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 UMODL1-AS1Q8N2C9 162 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 PGBD3Q8N328 593 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 DCAF4L2Q8NA75 395 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 TSTD1Q8NFU3 115 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 FAM71BQ8TC56 605 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 ARHGEF2Q92974 986 aaKnown RBP16.1■□□□□ 0.17
C9orf3-219ENST00000488186 ALG14Q96F25 216 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 BCCIPQ9P287 314 aaKnown RBP eCLIP16.1■□□□□ 0.17
C9orf3-219ENST00000488186 VPS51Q9UID3 782 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 OR51B4Q9Y5P0 310 aa16.1■□□□□ 0.17
C9orf3-219ENST00000488186 KDELR3O43731 214 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 SNAP91O60641 907 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 FTCDO95954 541 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 ZFXP17010 805 aaPredicted RBP16.09■□□□□ 0.17
C9orf3-219ENST00000488186 NRLP54845 237 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 RWDD2BP57060 319 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 ANGPT1Q15389 498 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 PTPRNQ16849 979 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 LINGO4Q6UY18 593 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 KATNAL2Q8IYT4 538 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 MAML2Q8IZL2 1156 aaPredicted RBP16.09■□□□□ 0.17
C9orf3-219ENST00000488186 LRRC57Q8N9N7 239 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 KDM1BQ8NB78 822 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 TSC1Q92574 1164 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 ERLEC1Q96DZ1 483 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 HMCESQ96FZ2 354 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 RBM41Q96IZ5 413 aaKnown RBP16.09■□□□□ 0.17
C9orf3-219ENST00000488186 PSMB7Q99436 277 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 GABRG3Q99928 467 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 SLC39A8Q9C0K1 460 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 POLR3BQ9NW08 1133 aaPredicted RBP16.09■□□□□ 0.17
C9orf3-219ENST00000488186 SLCO3A1Q9UIG8 710 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 HCN2Q9UL51 889 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 PCDHA3Q9Y5H8 950 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 RAD54BQ9Y620 910 aa16.09■□□□□ 0.17
C9orf3-219ENST00000488186 PIEZO1Q92508 2521 aa16.08■□□□□ 0.17
C9orf3-219ENST00000488186 DOCK4Q8N1I0 1966 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 ZSCAN5CA6NGD5 496 aaPredicted RBP16.08■□□□□ 0.16
C9orf3-219ENST00000488186 MIF4GDA9UHW6 222 aaKnown RBP16.08■□□□□ 0.16
C9orf3-219ENST00000488186 DCLK1O15075 740 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 ADAM23O75077 832 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 APBB3O95704 486 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 HLA-EP13747 358 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 IL4RP24394 825 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 CTNNA2P26232 953 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 CTNNA1P35221 906 aaKnown RBP16.08■□□□□ 0.16
C9orf3-219ENST00000488186 STK19P49842 368 aaPredicted RBP16.08■□□□□ 0.16
C9orf3-219ENST00000488186 PAPOLAP51003 745 aaKnown RBP16.08■□□□□ 0.16
C9orf3-219ENST00000488186 KAZNQ674X7 775 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 NT5DC3Q86UY8 548 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 VSIG1Q86XK7 387 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 CAMKK1Q8N5S9 505 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 EXD1Q8NHP7 514 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 PCDH19Q8TAB3 1148 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 UBE2Q2Q8WVN8 375 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 RNF157Q96PX1 679 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 HHIPQ96QV1 700 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 ACE2Q9BYF1 805 aaPredicted RBP16.08■□□□□ 0.16
C9orf3-219ENST00000488186 TMEM245Q9H330 911 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 PRDM16Q9HAZ2 1276 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 ETNK2Q9NVF9 386 aa16.08■□□□□ 0.16
C9orf3-219ENST00000488186 TRMT1Q9NXH9 659 aaKnown RBP16.08■□□□□ 0.16
C9orf3-219ENST00000488186 FARP1Q9Y4F1 1045 aaPredicted RBP16.08■□□□□ 0.16
C9orf3-219ENST00000488186 CCDC163A0A0D9SF12 145 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 EDDM13A0A1B0GTR0 161 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 TCRBV21S2A2A0A5A6 115 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 TTC34A8MYJ7 566 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 APOL1O14791 398 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 BNIP3LO60238 219 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 RNASEH1O60930 286 aaKnown RBP16.07■□□□□ 0.16
C9orf3-219ENST00000488186 CHRM1P11229 460 aaPredicted RBP16.07■□□□□ 0.16
C9orf3-219ENST00000488186 GLDCP23378 1020 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 PRKCHP24723 683 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 RECQLP46063 649 aaPredicted RBP16.07■□□□□ 0.16
C9orf3-219ENST00000488186 DNA2P51530 1060 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 SERINC3Q13530 473 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 TFDP2Q14188 446 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 DLG2Q15700 870 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 CCDC181Q5TID7 509 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 HEATR6Q6AI08 1181 aaKnown RBP16.07■□□□□ 0.16
C9orf3-219ENST00000488186 TSSK4Q6SA08 328 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 MFSD7Q6UXD7 560 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 TMEM92Q6UXU6 159 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 SH2D3CQ8N5H7 860 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 ZNF366Q8N895 744 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 TRIM58Q8NG06 486 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 NSMCE1Q8WV22 266 aa16.07■□□□□ 0.16
C9orf3-219ENST00000488186 HMGB4Q8WW32 186 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms