RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PCED1BQ96HM7 432 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 SLC9A7Q96T83 725 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 GBA3Q9H227 469 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 FAM96AQ9H5X1 160 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 NMRAL1Q9HBL8 299 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 SLC39A10Q9ULF5 831 aa18.31■□□□□ 0.52
VIM-206ENST00000487938 MPOP05164 745 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 CCR10P46092 362 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 ADAM17P78536 824 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 BEX3Q00994 111 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 DSG1Q02413 1049 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 ITGA7Q13683 1181 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 CCNIQ14094 377 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 NAIF1Q69YI7 327 aaPredicted RBP18.3■□□□□ 0.52
VIM-206ENST00000487938 OTOP3Q7RTS5 596 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 PLEKHH3Q7Z736 793 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 TDRD5Q8NAT2 981 aaKnown RBP18.3■□□□□ 0.52
VIM-206ENST00000487938 OR52B2Q96RD2 323 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 TKTL2Q9H0I9 626 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 OR12D3Q9UGF7 316 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 CDH22Q9UJ99 828 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 G3BP2Q9UN86 482 aaKnown RBP18.3■□□□□ 0.52
VIM-206ENST00000487938 CDY2AQ9Y6F7 541 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 CDY1Q9Y6F8 540 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 SHROOM3Q8TF72 1996 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 MAGEA13PA6NCF6 341 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 CCNT2O60583 730 aaKnown RBP18.3■□□□□ 0.52
VIM-206ENST00000487938 TRIM13O60858 407 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 CHRNGP07510 517 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 MYL3P08590 195 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 COX4I1P13073 169 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 PSEN2P49810 448 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 GRM3Q14832 879 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 CLEC14AQ86T13 490 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 NTAN1Q96AB6 310 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 PPP1R10Q96QC0 940 aaKnown RBP18.3■□□□□ 0.52
VIM-206ENST00000487938 APBA2Q99767 749 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 COLEC11Q9BWP8 271 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 GATA5Q9BWX5 397 aaPredicted RBP18.3■□□□□ 0.52
VIM-206ENST00000487938 TSPYL2Q9H2G4 693 aaPredicted RBP18.3■□□□□ 0.52
VIM-206ENST00000487938 WDCPQ9H6R7 721 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 SLC45A1Q9Y2W3 748 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 MRPL42Q9Y6G3 142 aaKnown RBP18.3■□□□□ 0.52
VIM-206ENST00000487938 TSC2P49815 1807 aa18.3■□□□□ 0.52
VIM-206ENST00000487938 BUD23O43709 281 aaKnown RBP18.29■□□□□ 0.52
VIM-206ENST00000487938 SMIM24O75264 130 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 ZCCHC18P0CG32 403 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 MYL4P12829 197 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 LRPAP1P30533 357 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 AVPR1AP37288 418 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 PSEN1P49768 467 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 ASPHQ12797 758 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 LPCAT4Q643R3 524 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 OLFML2BQ68BL8 750 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 PGM2L1Q6PCE3 622 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 FAM35AQ86V20 835 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 ACTRT2Q8TDY3 377 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 VPS39Q96JC1 886 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 WDR55Q9H6Y2 383 aaPredicted RBP18.29■□□□□ 0.52
VIM-206ENST00000487938 DNAJB4Q9UDY4 337 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 PACSIN3Q9UKS6 424 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 GNEQ9Y223 722 aaKnown RBP18.29■□□□□ 0.52
VIM-206ENST00000487938 GLTPD2A6NH11 291 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 NEMP1O14524 444 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 NCAM2O15394 837 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 CRABP2P29373 138 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 SERPINB5P36952 375 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 GLRBP48167 497 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 SCAPQ12770 1279 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 CDC16Q13042 620 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 KLF10Q13118 480 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 ARL13BQ3SXY8 428 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 TLK2Q86UE8 772 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 TASP1Q9H6P5 420 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 PIDD1Q9HB75 910 aa18.29■□□□□ 0.52
VIM-206ENST00000487938 TK2O00142 265 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 PHGDHO43175 533 aaKnown RBP18.28■□□□□ 0.52
VIM-206ENST00000487938 LRIG2O94898 1065 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 FBXO21O94952 628 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 SRGAP2BP0DMP2 458 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 MPSTP25325 297 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 NPY2RP49146 381 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 CLCNKBP51801 687 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 CRYBB1P53674 252 aaPredicted RBP18.28■□□□□ 0.52
VIM-206ENST00000487938 TBL3Q12788 808 aaKnown RBP18.28■□□□□ 0.52
VIM-206ENST00000487938 AAGABQ6PD74 315 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 HDAC11Q96DB2 347 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 LENG8Q96PV6 779 aaPredicted RBP18.28■□□□□ 0.52
VIM-206ENST00000487938 ADAMTS6Q9UKP5 1117 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 POMPQ9Y244 141 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 CCDC189A1A4V9 331 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 HCAR3P49019 387 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 AIF1P55008 147 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 GALNT2Q10471 571 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 ITPRIPL1Q6GPH6 555 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 SPATA22Q8NHS9 363 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 LPPQ93052 612 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 RNF34Q969K3 372 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 TEKT5Q96M29 485 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 IL22Q9GZX6 179 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms