RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 F9P00740 461 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 ALDOAP04075 364 aaKnown RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 CYP3A4P08684 503 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TNNT1P13805 278 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 ENGP17813 658 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 CHMP24386 653 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 HOXC9P31274 260 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 DIO1P49895 249 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TGFB2P61812 414 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 RAE1P78406 368 aaKnown RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 PSG6Q00889 435 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 NUCB1Q02818 461 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 CDK18Q07002 472 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TBL3Q12788 808 aaKnown RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 THOC5Q13769 683 aaKnown RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 FHL2Q14192 279 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 EIF4A2Q14240 407 aaKnown RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 SEC23BQ15437 767 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 RUNDC3AQ59EK9 446 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 NAA35Q5VZE5 725 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 FAM205BPQ63HN1 556 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 ATF7IPQ6VMQ6 1270 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 Q6ZWC4 215 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TMTC3Q6ZXV5 915 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 PARS2Q7L3T8 475 aaKnown RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 CPLX4Q7Z7G2 160 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 PNPLA1Q8N8W4 532 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 OR52L2PQ8NGH6 319 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 GLMPQ8WWB7 406 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TFAP2BQ92481 460 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 ERP27Q96DN0 273 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 MASTLQ96GX5 879 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 Q96MF0 132 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TIGD1Q96MW7 591 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 PLEKHF1Q96S99 279 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 AIFM2Q9BRQ8 373 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 CENPOQ9BU64 300 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 USP44Q9H0E7 712 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 SLC25A18Q9H1K4 315 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 TTYH1Q9H313 450 aaPredicted RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 CDCP1Q9H5V8 836 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 VEZTQ9HBM0 779 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 ARHGEF3Q9NR81 526 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 SNX15Q9NRS6 342 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 THAP1Q9NVV9 213 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 KCTD5Q9NXV2 234 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 ALKBH4Q9NXW9 302 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 GABRQQ9UN88 632 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 GPR34Q9UPC5 381 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 ENTPD2Q9Y5L3 495 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 COPG1Q9Y678 874 aaKnown RBP4.39□□□□□ -1.71
PTCD3-216ENST00000487043 SLIT3O75094 1523 aa4.39□□□□□ -1.71
PTCD3-216ENST00000487043 PEAK1Q9H792 1746 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 NFAT5O94916 1531 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 SH2D7A6NKC9 451 aaPredicted RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 NPIPB8E9PQR5 432 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 H3BNC9 293 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 PLSCR1O15162 318 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 DOK2O60496 412 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 TGM1P22735 817 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 CYP2C18P33260 490 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 GALNSP34059 522 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 HARS2P49590 506 aaKnown RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 JAK3P52333 1124 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 DRG2P55039 364 aaKnown RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 CDH15P55291 814 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 ARF3P61204 181 aaPredicted RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 ARF1P84077 181 aaKnown RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 SETQ01105 290 aaPredicted RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 GOLGA8FQ08AF8 430 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 CAMK1Q14012 370 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 NAA25Q14CX7 972 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 PTPRRQ15256 657 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 TBCEQ15813 527 aaPredicted RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 TXNRD1Q16881 649 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 USP39Q53GS9 565 aaKnown RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 DENND2CQ68D51 928 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 ADGRG6Q86SQ4 1221 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 ARHGEF19Q8IW93 802 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 LSM14AQ8ND56 463 aaKnown RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 RP9Q8TA86 221 aaKnown RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 RUFY2Q8WXA3 655 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 RFKQ969G6 155 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 KIF1BPQ96EK5 621 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 RNFT2Q96EX2 444 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 PBKQ96KB5 322 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 MPHOSPH8Q99549 860 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 TREX2Q9BQ50 279 aaPredicted RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 NUDT16L1Q9BRJ7 211 aaKnown RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 CTDSP1Q9GZU7 261 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 INTS2Q9H0H0 1204 aaKnown RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 SYNPO2LQ9H987 977 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 MED1Q15648 1581 aaPredicted RBP4.38□□□□□ -1.71
PTCD3-216ENST00000487043 ZNF521Q96K83 1311 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 NHSL1Q5SYE7 1610 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 RTL1A6NKG5 1358 aa4.38□□□□□ -1.71
PTCD3-216ENST00000487043 AHDC1Q5TGY3 1603 aaPredicted RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 PHRF1Q9P1Y6 1649 aaKnown RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 CYP3A7-CYP3A51PA0A087WV96 503 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 WDR27A2RRH5 827 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms