RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RSRC2Q7L4I2 434 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 DGLUCYQ7Z3D6 616 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TRMT11Q7Z4G4 463 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 KBTBD6Q86V97 674 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 C11orf74Q86VG3 221 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 RASSF3Q86WH2 238 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TTC30AQ86WT1 665 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 SFTPA1Q8IWL2 248 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 PPM1KQ8N3J5 372 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 CCDC33Q8N5R6 958 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 ALLCQ8N6M5 410 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 UBR7Q8N806 425 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 NAT16Q8N8M0 369 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TERB1Q8NA31 727 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 IL17RCQ8NAC3 791 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 TXNDC5Q8NBS9 432 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 WBP2Q969T9 261 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 ZC3H10Q96K80 434 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 CNOT6LQ96LI5 555 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 DMRTB1Q96MA1 342 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 IPO9Q96P70 1041 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 RBCK1Q9BYM8 510 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 DCLK3Q9C098 648 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 WNT10AQ9GZT5 417 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 LRRC4Q9HBW1 653 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 OLA1Q9NTK5 396 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 SEMA4GQ9NTN9 838 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 DNAJC17Q9NVM6 304 aaKnown RBP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 DLL3Q9NYJ7 618 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 MARCH2Q9P0N8 246 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 RASAL2Q9UJF2 1139 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 STRIP2Q9ULQ0 834 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 PCDHB4Q9Y5E5 795 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 LAMA1P25391 3075 aa7.11□□□□□ -1.27
CCDC88A-213ENST00000476903 PI4KAP42356 2102 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 M0QYV0 167 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 SGK1O00141 431 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 TULP2O00295 520 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 O00370 1275 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 EPN2O95208 641 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 AFPP02771 609 aaKnown RBP7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 CORO1AP31146 461 aaKnown RBP7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 GBP1P32455 592 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 CHKAP35790 457 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 GCNT1Q02742 428 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 ADIGQ0VDE8 80 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 EFEMP1Q12805 493 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 STILQ15468 1287 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 CAMK4Q16566 473 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 SKOR2Q2VWA4 1001 aaPredicted RBP7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 C10orf76Q5T2E6 689 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 EMC10Q5UCC4 262 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 ANO7Q6IWH7 933 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 LCLAT1Q6UWP7 414 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 GGNQ86UU5 652 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 IRF2BP1Q8IU81 584 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 TRIM59Q8IWR1 403 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 SIX6OS1Q8N1H7 587 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 SCML4Q8N228 414 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 ZNF513Q8N8E2 541 aaPredicted RBP7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 MDGA1Q8NFP4 955 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 LMO3Q8TAP4 145 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 UBA3Q8TBC4 463 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 RNF139Q8WU17 664 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 KCTD13Q8WZ19 329 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 SRRTQ9BXP5 876 aaKnown RBP7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 TPSD1Q9BZJ3 242 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 ULBP1Q9BZM6 244 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 CNGB3Q9NQW8 809 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 BCCIPQ9P287 314 aaKnown RBP eCLIP7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 RWDD2AQ9UIY3 292 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 PCDHGA5Q9Y5G8 931 aa7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 TNRC6BQ9UPQ9 1833 aaKnown RBP7.1□□□□□ -1.27
CCDC88A-213ENST00000476903 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 SLC12A8A0AV02 714 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 ANTXRLA6NF34 631 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 KLKB1P03952 638 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 CYBBP04839 570 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 HMBSP08397 361 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 ZNF806P0C7X5 589 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 LCP1P13796 627 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 HOXB2P14652 356 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 MPLP40238 635 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 KIR3DL1P43629 444 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 HARS2P49590 506 aaKnown RBP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 BYSLQ13895 437 aaKnown RBP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 CNGA2Q16280 664 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 PLK5Q496M5 336 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 AASDHQ4L235 1098 aaPredicted RBP7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 BSPRYQ5W0U4 402 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 SDE2Q6IQ49 451 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 RRAGAQ7L523 313 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 BHLHA9Q7RTU4 235 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 CREBRFQ8IUR6 639 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 DENND1CQ8IV53 801 aa7.09□□□□□ -1.27
CCDC88A-213ENST00000476903 ARHGEF19Q8IW93 802 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms