RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 FZD3Q9NPG1 666 aa12.61□□□□□ -0.39
HDAC3-204ENST00000469207 TMPRSS4Q9NRS4 437 aa12.61□□□□□ -0.39
HDAC3-204ENST00000469207 UCKL1Q9NWZ5 548 aa12.61□□□□□ -0.39
HDAC3-204ENST00000469207 SLC12A6Q9UHW9 1150 aa12.61□□□□□ -0.39
HDAC3-204ENST00000469207 HOOK1Q9UJC3 728 aaKnown RBP12.61□□□□□ -0.39
HDAC3-204ENST00000469207 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.6□□□□□ -0.39
HDAC3-204ENST00000469207 BICDL2A1A5D9 508 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 MCF2LO15068 1137 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 SMAD6O43541 496 aaKnown RBP12.6□□□□□ -0.39
HDAC3-204ENST00000469207 SIGLEC6O43699 453 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 ATP9BO43861 1147 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 ADCY5O95622 1261 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 PRLRP16471 622 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 CKMT2P17540 419 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 CCR1P32246 355 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 ABCG1P45844 678 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 RNASE9P60153 205 aaKnown RBP12.6□□□□□ -0.39
HDAC3-204ENST00000469207 SULT2A1Q06520 285 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 PAK1Q13153 545 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 ZNF177Q13360 481 aaPredicted RBP12.6□□□□□ -0.39
HDAC3-204ENST00000469207 SLC45A4Q5BKX6 768 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 RABGAP1LQ5R372 815 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 C6orf118Q5T5N4 469 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 OTUD1Q5VV17 481 aaPredicted RBP12.6□□□□□ -0.39
HDAC3-204ENST00000469207 TRIM65Q6PJ69 517 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 ELOA2Q8IYF1 753 aaPredicted RBP12.6□□□□□ -0.39
HDAC3-204ENST00000469207 C1orf131Q8NDD1 294 aaKnown RBP12.6□□□□□ -0.39
HDAC3-204ENST00000469207 ARRDC3Q96B67 414 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 NOX5Q96PH1 765 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 PSMB7Q99436 277 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 ERVMER34-1Q9H9K5 563 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 SLC25A13Q9UJS0 675 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 VPS28Q9UK41 221 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 COL5A1P20908 1838 aaPredicted RBP12.6□□□□□ -0.39
HDAC3-204ENST00000469207 SHROOM3Q8TF72 1996 aa12.6□□□□□ -0.39
HDAC3-204ENST00000469207 NYNRINQ9P2P1 1898 aaKnown RBP12.59□□□□□ -0.39
HDAC3-204ENST00000469207 A0A0D9SEW6 157 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 M0QYT0 321 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 RNGTTO60942 597 aaKnown RBP12.59□□□□□ -0.39
HDAC3-204ENST00000469207 ENDOD1O94919 500 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 GNA14O95837 355 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 C1SP09871 688 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 SRCP12931 536 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 GLDCP23378 1020 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 RRM1P23921 792 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 HNF1BP35680 557 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 PPP1R2P41236 205 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 CLDN2P57739 230 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 INSM1Q01101 510 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-204ENST00000469207 PROX2Q3B8N5 592 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 ZNF542PQ5EBM4 170 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 EFHC1Q5JVL4 640 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 PIP5KL1Q5T9C9 394 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 FAM46CQ5VWP2 391 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 OLFML1Q6UWY5 402 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 LINGO4Q6UY18 593 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 SH2D3CQ8N5H7 860 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 CHST14Q8NCH0 376 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 NXPE2Q96DL1 559 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 KLHDC7BQ96G42 594 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 TRIM62Q9BVG3 475 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 KDM4CQ9H3R0 1056 aa12.59□□□□□ -0.39
HDAC3-204ENST00000469207 A0A1W2PQU0 124 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 EIF4E1BA6NMX2 242 aaKnown RBP12.58□□□□□ -0.4
HDAC3-204ENST00000469207 E9PAM4 449 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 FOXN3O00409 490 aaPredicted RBP12.58□□□□□ -0.4
HDAC3-204ENST00000469207 FFAR2O15552 330 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 THEGLP0DJG4 465 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 GIMD1P0DJR0 217 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 SLC2A3P11169 496 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 PON1P27169 355 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 CLCN1P35523 988 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 SLC6A3Q01959 620 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 CAMK4Q16566 473 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 PTPN20Q4JDL3 420 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 C2CD6Q53TS8 623 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 ARTNQ5T4W7 220 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 FOXR2Q6PJQ5 311 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 KDM7AQ6ZMT4 941 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 C11orf57Q6ZUT1 292 aaPredicted RBP12.58□□□□□ -0.4
HDAC3-204ENST00000469207 TMC6Q7Z403 805 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 SLC47A2Q86VL8 602 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 TRIM69Q86WT6 500 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 IRF2BP1Q8IU81 584 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 ATP11CQ8NB49 1132 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 OR2A12Q8NGT7 310 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 TKTL2Q9H0I9 626 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 MUC3BQ9H195 1237 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 TNKS2Q9H2K2 1166 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 PRORYQ9H606 182 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 PIGVQ9NUD9 493 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 MPP6Q9NZW5 540 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 ZFR2Q9UPR6 939 aaKnown RBP12.58□□□□□ -0.4
HDAC3-204ENST00000469207 TBC1D30Q9Y2I9 924 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 PCDHB1Q9Y5F3 818 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 ACTL7AQ9Y615 435 aa12.58□□□□□ -0.4
HDAC3-204ENST00000469207 TDRD6O60522 2096 aaKnown RBP12.58□□□□□ -0.4
HDAC3-204ENST00000469207 C1QTNF3-AMACRE9PGA6 284 aa12.57□□□□□ -0.4
HDAC3-204ENST00000469207 PRAMEF26H0Y7S4 382 aa12.57□□□□□ -0.4
HDAC3-204ENST00000469207 KPNA3O00505 521 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms