RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.22■□□□□ 0.51
COL7A1-205ENST00000465238 MYEOVQ96EZ4 313 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 PRICKLE1Q96MT3 831 aaPredicted RBP18.22■□□□□ 0.51
COL7A1-205ENST00000465238 SCNM1Q9BWG6 230 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 TRIM7Q9C029 511 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 ZDHHC5Q9C0B5 715 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 LUC7LQ9NQ29 371 aaKnown RBP18.22■□□□□ 0.51
COL7A1-205ENST00000465238 ANLNQ9NQW6 1124 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 TMPRSS4Q9NRS4 437 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 UVRAGQ9P2Y5 699 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 ANAPC7Q9UJX3 599 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 INTUQ9ULD6 942 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 VANGL2Q9ULK5 521 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 PLA2G4CQ9UP65 541 aa18.22■□□□□ 0.51
COL7A1-205ENST00000465238 EPN1Q9Y6I3 576 aaPredicted RBP18.22■□□□□ 0.51
COL7A1-205ENST00000465238 A0A1B0GTW7 788 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 C1QTNF9BB2RNN3 333 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 I6L893 689 aaPredicted RBP18.21■□□□□ 0.51
COL7A1-205ENST00000465238 MYO1FO00160 1098 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 TOP3BO95985 862 aaKnown RBP18.21■□□□□ 0.51
COL7A1-205ENST00000465238 C1QTNF9P0C862 333 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 CD59P13987 128 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 SPINK2P20155 84 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 MAOBP27338 520 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 GGCXP38435 758 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 CAMK2GQ13555 558 aaPredicted RBP18.21■□□□□ 0.51
COL7A1-205ENST00000465238 PIGHQ14442 188 aaPredicted RBP18.21■□□□□ 0.51
COL7A1-205ENST00000465238 ACAP1Q15027 740 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 TTC39BQ5VTQ0 682 aaPredicted RBP18.21■□□□□ 0.51
COL7A1-205ENST00000465238 CHST9Q7L1S5 443 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 KIAA0907Q7Z7F0 614 aaPredicted RBP18.21■□□□□ 0.51
COL7A1-205ENST00000465238 SLFN11Q7Z7L1 901 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 C14orf80Q86SX3 495 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 MFN1Q8IWA4 741 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 AHI1Q8N157 1196 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 CARNMT1Q8N4J0 409 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 OR2I1PQ8NGU4 316 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 OR2T3Q8NH03 318 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 ZNF564Q8TBZ8 553 aaPredicted RBP18.21■□□□□ 0.51
COL7A1-205ENST00000465238 NTAN1Q96AB6 310 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 PCED1AQ9H1Q7 454 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 TMEM245Q9H330 911 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 ABCB8Q9NUT2 735 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 IP6K2Q9UHH9 426 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 GGA2Q9UJY4 613 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 SNX10Q9Y5X0 201 aa18.21■□□□□ 0.51
COL7A1-205ENST00000465238 ZZEF1O43149 2961 aa18.21■□□□□ 0.5
COL7A1-205ENST00000465238 ASPMQ8IZT6 3477 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 SPAARA0A1B0GVQ0 90 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 SOWAHDA6NJG2 315 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 METTL12A8MUP2 240 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 EIF3CLB5ME19 914 aaKnown RBP18.2■□□□□ 0.5
COL7A1-205ENST00000465238 H0Y626 953 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 GJB3O75712 270 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 TRIM16O95361 564 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 LCA5LO95447 670 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 C7P10643 843 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 PABPC1P11940 636 aaKnown RBP18.2■□□□□ 0.5
COL7A1-205ENST00000465238 AIF1P55008 147 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 CDH18Q13634 790 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 FNDC3BQ53EP0 1204 aaKnown RBP18.2■□□□□ 0.5
COL7A1-205ENST00000465238 EFHC2Q5JST6 749 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 ADIPOR2Q86V24 386 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 CCDC185Q8N715 623 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 FIBINQ8TAL6 211 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 IGSF8Q969P0 613 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 EIF3CQ99613 913 aaKnown RBP18.2■□□□□ 0.5
COL7A1-205ENST00000465238 TMEM121BQ9BXQ6 578 aaPredicted RBP18.2■□□□□ 0.5
COL7A1-205ENST00000465238 OSBPL2Q9H1P3 480 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 FBRSQ9HAH7 460 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 LCMT1Q9UIC8 334 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 NEUROG3Q9Y4Z2 214 aa18.2■□□□□ 0.5
COL7A1-205ENST00000465238 MUC22E2RYF6 1773 aaPredicted RBP18.19■□□□□ 0.5
COL7A1-205ENST00000465238 ZFHX4Q86UP3 3567 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 TMEM8BA6NDV4 472 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 SRGAP2O75044 1071 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 LUC7L3O95232 432 aaKnown RBP18.19■□□□□ 0.5
COL7A1-205ENST00000465238 NDUFA10O95299 355 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 ATP5BP06576 529 aaKnown RBP18.19■□□□□ 0.5
COL7A1-205ENST00000465238 DLDP09622 509 aaKnown RBP18.19■□□□□ 0.5
COL7A1-205ENST00000465238 HLA-EP13747 358 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 GRIK2Q13002 908 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 DCAF12L1Q5VU92 463 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 CACUL1Q86Y37 369 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 RHOT2Q8IXI1 618 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 ZCCHC9Q8N567 271 aaKnown RBP18.19■□□□□ 0.5
COL7A1-205ENST00000465238 KDF1Q8NAX2 398 aaPredicted RBP18.19■□□□□ 0.5
COL7A1-205ENST00000465238 CYB5D2Q8WUJ1 264 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 ANP32BQ92688 251 aaKnown RBP18.19■□□□□ 0.5
COL7A1-205ENST00000465238 BTBD6Q96KE9 485 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 MIR1-1HGQ9H1L0 117 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 OR12D3Q9UGF7 316 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 PCSK1NQ9UHG2 260 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 PCDHA13Q9Y5I0 950 aa18.19■□□□□ 0.5
COL7A1-205ENST00000465238 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.18■□□□□ 0.5
COL7A1-205ENST00000465238 A0A1B0GVM2 712 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 TCAF2A6NFQ2 919 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 DRGXA6NNA5 263 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 E9PAM4 449 aa18.18■□□□□ 0.5
COL7A1-205ENST00000465238 HYAL3O43820 417 aaPredicted RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms