RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 CIR1Q86X95 450 aaPredicted RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 HSPH1Q92598 858 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 FATE1Q969F0 183 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 SIPA1Q96FS4 1042 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 VPS51Q9UID3 782 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 RASA4BC9J798 803 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 RASA4O43374 803 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 CCDC175P0C221 793 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 MZF1P28698 734 aaPredicted RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 SERPINH1P50454 418 aaKnown RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 SUOXP51687 545 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 NAP1L1P55209 391 aaKnown RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 COPS2P61201 443 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 PTPRNQ16849 979 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 EMC10Q5UCC4 262 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 TIGD7Q6NT04 549 aaPredicted RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 MRGPRX3Q96LB0 322 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 PEBP4Q96S96 227 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 PSMB7Q99436 277 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 MAK16Q9BXY0 300 aaKnown RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 SGK2Q9HBY8 427 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 CKAP5Q14008 2032 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 A0A1W2PQ67 120 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 I6L893 689 aaPredicted RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 HOXD12P35452 270 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 SNRPD1P62314 119 aaKnown RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 ZNF33AQ06730 810 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 FSCBQ5H9T9 825 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 ZNF354CQ86Y25 554 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 APCDD1Q8J025 514 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 ARFGAP1Q8N6T3 406 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 FOXJ1Q92949 421 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 MYEOVQ96EZ4 313 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 OSBPL1AQ9BXW6 950 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 RSPH9Q9H1X1 276 aaPredicted RBP10.94□□□□□ -0.66
UBR4-208ENST00000459947 AMACRQ9UHK6 382 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 FZD4Q9ULV1 537 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 SNX10Q9Y5X0 201 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 FANCMQ8IYD8 2048 aa10.94□□□□□ -0.66
UBR4-208ENST00000459947 CCDC66A2RUB6 948 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 TMEM110-MUSTN1A8MSY1 372 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 TRIM24O15164 1050 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 IGSF6O95976 241 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 ERCC2P18074 760 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 C5AR1P21730 350 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 PRKCHP24723 683 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 IL10RBQ08334 325 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 TMEM215Q68D42 235 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 C22orf39Q6P5X5 142 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 PKN3Q6P5Z2 889 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 RCOR2Q8IZ40 523 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 HMGB4Q8WW32 186 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 TSC1Q92574 1164 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 ZC3H10Q96K80 434 aaKnown RBP10.93□□□□□ -0.66
UBR4-208ENST00000459947 SP110Q9HB58 689 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 UBA2Q9UBT2 640 aaPredicted RBP10.93□□□□□ -0.66
UBR4-208ENST00000459947 NEU3Q9UQ49 428 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 A0A1W2PQF6 199 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 LMNAP02545 664 aaKnown RBP10.93□□□□□ -0.66
UBR4-208ENST00000459947 PTMAP06454 111 aaKnown RBP10.93□□□□□ -0.66
UBR4-208ENST00000459947 CES1P23141 567 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 MSNP26038 577 aaKnown RBP10.93□□□□□ -0.66
UBR4-208ENST00000459947 SERINC3Q13530 473 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 SIM2Q14190 667 aaPredicted RBP10.93□□□□□ -0.66
UBR4-208ENST00000459947 ANO7Q6IWH7 933 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 KIAA1324Q6UXG2 1013 aaKnown RBP10.93□□□□□ -0.66
UBR4-208ENST00000459947 TMEM92Q6UXU6 159 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 RAD9BQ6WBX8 426 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 LPCAT2Q7L5N7 544 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 TMEM139Q8IV31 216 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 ATP11CQ8NB49 1132 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 TMIEQ8NEW7 156 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 CYB5D2Q8WUJ1 264 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 FAF2Q96CS3 445 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 GDAP1L1Q96MZ0 367 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 CSPG4P5Q96PW8 444 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 FERMT1Q9BQL6 677 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 TRIM7Q9C029 511 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 KDM4CQ9H3R0 1056 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 PRSS16Q9NQE7 514 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 GPATCH2LQ9NWQ4 482 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 CBX4O00257 560 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 KRT1P04264 644 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 GABRG2P18507 467 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 CTNNA2P26232 953 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 P2RY2P41231 377 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 CSNK1DP48730 415 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 NHLH1Q02575 133 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 AFMIDQ63HM1 303 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 KATNAL2Q8IYT4 538 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 UBL4BQ8N7F7 174 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 TPCN2Q8NHX9 752 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 ALS2CR12Q96Q35 445 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 PABPC3Q9H361 631 aaKnown RBP10.93□□□□□ -0.66
UBR4-208ENST00000459947 DYRK4Q9NR20 520 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 CWC15Q9P013 229 aaKnown RBP10.93□□□□□ -0.66
UBR4-208ENST00000459947 SUSD2Q9UGT4 822 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 EFR3BQ9Y2G0 817 aa10.93□□□□□ -0.66
UBR4-208ENST00000459947 FAM170AA1A519 330 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms