RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 ZMIZ2Q8NF64 920 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 PIWIL2Q8TC59 973 aaKnown RBP12.2□□□□□ -0.46
SMPD4-213ENST00000454468 VPS39Q96JC1 886 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 GLT1D1Q96MS3 346 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 DCDC2Q9UHG0 476 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 FBXW11Q9UKB1 542 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 PLA2G4CQ9UP65 541 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 SLC12A8A0AV02 714 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 TRPA1O75762 1119 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 TPSB2P20231 275 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 EPHA3P29320 983 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 NEK3P51956 506 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 TPSAB1Q15661 275 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 TAZQ16635 292 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 HABP4Q5JVS0 413 aaKnown RBP12.2□□□□□ -0.46
SMPD4-213ENST00000454468 RAP1GAP2Q684P5 730 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 ESRP1Q6NXG1 681 aaKnown RBP12.2□□□□□ -0.46
SMPD4-213ENST00000454468 C4orf22Q6V702 233 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 RPS27LQ71UM5 84 aaKnown RBP12.2□□□□□ -0.46
SMPD4-213ENST00000454468 ZNF280BQ86YH2 543 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 RBM15BQ8NDT2 890 aaKnown RBP12.2□□□□□ -0.46
SMPD4-213ENST00000454468 URGCPQ8TCY9 931 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 UTP4Q969X6 686 aaKnown RBP12.2□□□□□ -0.46
SMPD4-213ENST00000454468 MIEF2Q96C03 454 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 NUMBLQ9Y6R0 609 aa12.2□□□□□ -0.46
SMPD4-213ENST00000454468 GSC2O15499 205 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 GPC4O75487 556 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 USP1O94782 785 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 PMLP29590 882 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 COG7P83436 770 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 GRM3Q14832 879 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 ZNF534Q76KX8 674 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 PPHLN1Q8NEY8 458 aaKnown RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 RAET1EQ8TD07 263 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 TRIB2Q92519 343 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 FBXO32Q969P5 355 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 SLC7A6OSQ96CW6 309 aaPredicted RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 LRMDAQ9H2I8 198 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 RLFQ13129 1914 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 MYO9BQ13459 2157 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 MBLAC1A4D2B0 266 aaPredicted RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 MGEA5O60502 916 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 CDH17Q12864 832 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 GRAMD1BQ3KR37 738 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 MMEL1Q495T6 779 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 TREML1Q86YW5 311 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 ACVR1CQ8NER5 493 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 OR10T2Q8NGX3 314 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 PYDC1Q8WXC3 89 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 CASP10Q92851 521 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 USP13Q92995 863 aaPredicted RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 RMDN1Q96DB5 314 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 TMA16Q96EY4 203 aaKnown RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 RNPEPL1Q9HAU8 725 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 NMRAL1Q9HBL8 299 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 NDFIP2Q9NV92 336 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 ARHGEF38Q9NXL2 777 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 STOML1Q9UBI4 398 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 SLC2A6Q9UGQ3 507 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 GTF2IRD1Q9UHL9 959 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 IPO11Q9UI26 975 aaKnown RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 HBS1LQ9Y450 684 aaKnown RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 FAM159BA6NKW6 160 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 DUSP11O75319 330 aaKnown RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 DLDP09622 509 aaKnown RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 PTDSS1P48651 473 aaKnown RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 MCCD1P59942 119 aaPredicted RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 RABGAP1LQ5R372 815 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 C4orf50Q6ZRC1 276 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 SCUBE1Q8IWY4 988 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 WDR60Q8WVS4 1066 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 ZNF512Q96ME7 567 aaPredicted RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 PPP1R10Q96QC0 940 aaKnown RBP12.19□□□□□ -0.46
SMPD4-213ENST00000454468 PHACTR1Q9C0D0 580 aa12.19□□□□□ -0.46
SMPD4-213ENST00000454468 PSME4Q14997 1843 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 NEMP2A6NFY4 417 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 PLIN3O60664 434 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 STAU1O95793 577 aaKnown RBP12.18□□□□□ -0.46
SMPD4-213ENST00000454468 CHRNGP07510 517 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 HNRNPLP14866 589 aaKnown RBP eCLIP12.18□□□□□ -0.46
SMPD4-213ENST00000454468 CD86P42081 329 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 SERPINB8P50452 374 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 SLC18A2Q05940 514 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 SLC12A1Q13621 1099 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 RALGPS1Q5JS13 557 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 PDPK2PQ6A1A2 396 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 ALKAL1Q6UXT8 129 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 IFNL1Q8IU54 200 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 DEFB107AQ8IZN7 70 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 TMEM86AQ8N2M4 240 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 EFHBQ8N7U6 833 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 TDRD5Q8NAT2 981 aaKnown RBP12.18□□□□□ -0.46
SMPD4-213ENST00000454468 IFT43Q96FT9 208 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 CATSPER2Q96P56 530 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 CYP2S1Q96SQ9 504 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 TUBB6Q9BUF5 446 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 SMPD4Q9NXE4 827 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 CRCPO75575 148 aa12.18□□□□□ -0.46
SMPD4-213ENST00000454468 SERPINE1P05121 402 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms