RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 APOC2P02655 101 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 ASLP04424 464 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 ATP5BP06576 529 aaKnown RBP11.85□□□□□ -0.51
SCN9A-204ENST00000452182 POLR2EP19388 210 aaKnown RBP11.85□□□□□ -0.51
SCN9A-204ENST00000452182 CASQ1P31415 396 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 CXCR5P32302 372 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 GBE1Q04446 702 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 KDSRQ06136 332 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 ZNF33AQ06730 810 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 GALNT2Q10471 571 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 PON2Q15165 354 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 TMEM215Q68D42 235 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 MBLAC2Q68D91 279 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 FSTL4Q6MZW2 842 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 APCDD1Q8J025 514 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 SIX5Q8N196 739 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 TTC13Q8NBP0 860 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 OR7D4Q8NG98 312 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 ACTRT1Q8TDG2 376 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 P3H4Q92791 437 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 HMCESQ96FZ2 354 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 CELF6Q96J87 481 aaKnown RBP11.85□□□□□ -0.51
SCN9A-204ENST00000452182 OLFM3Q96PB7 478 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 OSBPL6Q9BZF3 934 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 BRD8Q9H0E9 1235 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 ATP13A1Q9HD20 1204 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 ELOVL2Q9NXB9 296 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 A0A0C4DFX4 3053 aa11.85□□□□□ -0.51
SCN9A-204ENST00000452182 KANSL1LA0AUZ9 987 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 ZSCAN5CA6NGD5 496 aaPredicted RBP11.84□□□□□ -0.51
SCN9A-204ENST00000452182 K7EQS6 105 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 NPC1O15118 1278 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 KDELR3O43731 214 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 CEP104O60308 925 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 ZMPSTE24O75844 475 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 SLC34A2O95436 690 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 DLDP09622 509 aaKnown RBP11.84□□□□□ -0.51
SCN9A-204ENST00000452182 ACVRL1P37023 503 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 PAPOLAP51003 745 aaKnown RBP11.84□□□□□ -0.51
SCN9A-204ENST00000452182 DYNLT1P63172 113 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 SLC20A2Q08357 652 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 SLC10A2Q12908 348 aaPredicted RBP11.84□□□□□ -0.51
SCN9A-204ENST00000452182 CCINQ13939 588 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 PDK1Q15118 436 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 LLGL1Q15334 1064 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 IL31Q6EBC2 164 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 SYNPOQ8N3V7 929 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 KDM1BQ8NB78 822 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 COG1Q8WTW3 980 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 UCMAQ8WVF2 138 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 MAIP1Q8WWC4 291 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 EZH1Q92800 747 aaPredicted RBP11.84□□□□□ -0.51
SCN9A-204ENST00000452182 FATE1Q969F0 183 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 HDAC11Q96DB2 347 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 TSGA13Q96PP4 275 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 NAP1L3Q99457 506 aaPredicted RBP11.84□□□□□ -0.51
SCN9A-204ENST00000452182 FRMD8P1Q9BZ68 369 aaPredicted RBP11.84□□□□□ -0.51
SCN9A-204ENST00000452182 HPCAL4Q9UM19 191 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 HEY1Q9Y5J3 304 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 F5P12259 2224 aa11.84□□□□□ -0.51
SCN9A-204ENST00000452182 MUC22E2RYF6 1773 aaPredicted RBP11.84□□□□□ -0.51
SCN9A-204ENST00000452182 ZNF500O60304 480 aaPredicted RBP11.83□□□□□ -0.52
SCN9A-204ENST00000452182 FGGP02679 453 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 HNRNPLP14866 589 aaKnown RBP eCLIP11.83□□□□□ -0.521e-6■■□□□ 13.4
SCN9A-204ENST00000452182 GARSP41250 739 aaKnown RBP11.83□□□□□ -0.52
SCN9A-204ENST00000452182 KIR2DL1P43626 348 aaPredicted RBP11.83□□□□□ -0.52
SCN9A-204ENST00000452182 GEMIN4P57678 1058 aaKnown RBP11.83□□□□□ -0.52
SCN9A-204ENST00000452182 ECT2LQ008S8 904 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 IL10RBQ08334 325 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 XRCC4Q13426 336 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 NOMO1Q15155 1222 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 DGKKQ5KSL6 1271 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 CCDC181Q5TID7 509 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 RETSATQ6NUM9 610 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 TRIM67Q6ZTA4 783 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 TP53INP2Q8IXH6 220 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 CASKIN2Q8WXE0 1202 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 SPON2Q9BUD6 331 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 CIPCQ9C0C6 399 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 LTB4R2Q9NPC1 389 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 RNF14Q9UBS8 474 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 IPO11Q9UI26 975 aaKnown RBP11.83□□□□□ -0.52
SCN9A-204ENST00000452182 VPS51Q9UID3 782 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 HS3ST2Q9Y278 367 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 NCOR1O75376 2440 aa11.83□□□□□ -0.52
SCN9A-204ENST00000452182 ESPNB1AK53 854 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 CBX4O00257 560 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 DFFAO00273 331 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 PPP1R12AO14974 1030 aaPredicted RBP11.82□□□□□ -0.52
SCN9A-204ENST00000452182 GPR37O15354 613 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 MAFKO60675 156 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 PRAMEF11O60813 436 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 EGFP01133 1207 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 SRPRAP08240 638 aaKnown RBP11.82□□□□□ -0.52
SCN9A-204ENST00000452182 CHRNB1P11230 501 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 PECAM1P16284 738 aaPredicted RBP11.82□□□□□ -0.52
SCN9A-204ENST00000452182 CD72P21854 359 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 CCNCP24863 283 aa11.82□□□□□ -0.52
SCN9A-204ENST00000452182 MRPS21P82921 87 aaKnown RBP11.82□□□□□ -0.52
SCN9A-204ENST00000452182 ARF5P84085 180 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms