RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SKAP2O75563 359 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 KLHL2O95198 593 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 FAM107AO95990 144 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 CDKN2BP42772 138 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 FAAP100Q0VG06 881 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 HIST2H2ACQ16777 129 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 GRAMD1BQ3KR37 738 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 HIST2H2AA3Q6FI13 130 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 CLEC20AQ6ZU45 233 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 NAT16Q8N8M0 369 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TSEN2Q8NCE0 465 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 CLEC4CQ8WTT0 213 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 ARNTL2Q8WYA1 636 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 MAGEB18Q96M61 343 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 ERVK-5Q9HDB9 667 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 INSL6Q9Y581 213 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 MYH8P13535 1937 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 A0A096LPK6 155 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TRPC5OSA6NMA1 111 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 NEDD8-MDP1E9PL57 170 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 H2AFYO75367 372 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 C8AP07357 584 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 GBE1Q04446 702 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 PKN2Q16513 984 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 KBTBD12Q3ZCT8 623 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 RFWD3Q6PCD5 774 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 GET4Q7L5D6 327 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 METTL3Q86U44 580 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 KREMEN2Q8NCW0 462 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 CCDC124Q96CT7 223 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 C11orf84Q9BUA3 381 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 BCO2Q9BYV7 579 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 RHOBTB2Q9BYZ6 727 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 KIAA1522Q9P206 1035 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 CTNNAL1Q9UBT7 734 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 AGO1Q9UL18 857 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 NCKAP1Q9Y2A7 1128 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 R3HDM2Q9Y2K5 976 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 CRYL1Q9Y2S2 319 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 MFSD11O43934 449 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 MTA2O94776 668 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TACR2P21452 398 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TM4SF4P48230 202 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 KCTD19Q17RG1 926 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 N4BP2L1Q5TBK1 243 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 PLD5Q8N7P1 536 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 SLC26A7Q8TE54 656 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 PPP1R16AQ96I34 528 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 ZCCHC2Q9C0B9 1178 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 GDAP2Q9NXN4 497 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 SIX4Q9UIU6 781 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 ADH1CP00326 375 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 C1RP00736 705 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 CD48P09326 243 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 GHRHRQ02643 423 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 DDX39BQ13838 428 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 POM121L1PQ3SYA9 428 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 LRRC8EQ6NSJ5 796 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TRPM8Q7Z2W7 1104 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 ART4Q93070 314 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TMEM175Q9BSA9 504 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 MRPL1Q9BYD6 325 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 ADAMTS10Q9H324 1103 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 CATSPERZQ9NTU4 200 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TBC1D14Q9P2M4 693 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 LRIG2O94898 1065 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TPBGLP0DKB5 382 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 ENO3P13929 434 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TNFRSF8P28908 595 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 CRABP2P29373 138 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 IFNA8P32881 189 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 PGM1P36871 562 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 ABL2P42684 1182 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 AARSP49588 968 aaKnown RBP eCLIP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 IFI35P80217 286 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 PTP4A2Q12974 167 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 NAB1Q13506 487 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 BOP1Q14137 746 aaKnown RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 MPPE1Q53F39 396 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 PPP1R15BQ5SWA1 713 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 TTC7BQ86TV6 843 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 PYROXD2Q8N2H3 581 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 ARL14EPQ8N8R7 260 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-213ENST00000448038 MCRS1Q96EZ8 462 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 PWWP2AQ96N64 755 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 NCKIPSDQ9NZQ3 722 aa7.53□□□□□ -1.2
SYNE1-213ENST00000448038 LRP5O75197 1615 aa7.52□□□□□ -1.2
SYNE1-213ENST00000448038 CLUHO75153 1309 aa7.52□□□□□ -1.2
SYNE1-213ENST00000448038 KAT6AQ92794 2004 aa7.52□□□□□ -1.2
SYNE1-213ENST00000448038 IGKV6-21A0A0C4DH24 114 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 TCRBV7S2A1N4TA0A589 114 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 H3BQF6 201 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ACSL4O60488 711 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 GPR32O75388 356 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 E2F6O75461 281 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 BANF1O75531 89 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 FAM163BP0C2L3 166 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 OR56A5P0C7T3 313 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 RHOQP17081 205 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms