RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 VPS51Q9UID3 782 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 SH2B3Q9UQQ2 575 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 SLC27A6Q9Y2P4 619 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 TTLL3Q9Y4R7 772 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 ADGRB3O60242 1522 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 NRXN1Q9ULB1 1477 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 PIK3C2GO75747 1445 aa4.54□□□□□ -1.68
VPS29-202ENST00000447578 PLEKHH1Q9ULM0 1364 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 FER1L4A9Z1Z3 1794 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 ABCC3O15438 1527 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 KIAA1210Q9ULL0 1709 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 A1L4Q6 167 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 VWA3AA6NCI4 1184 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 PGPEP1LA6NFU8 196 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 AGPSO00116 658 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 SPTLC2O15270 562 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 SEPT4O43236 478 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 KLK10O43240 276 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 EXOC3O60645 756 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 USO1O60763 962 aaKnown RBP4.53□□□□□ -1.68
VPS29-202ENST00000447578 BCAR3O75815 825 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 NPSP0C0P6 89 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 RBL1P28749 1068 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 ADORA2AP29274 412 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 GSTM5P46439 218 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 POLD2P49005 469 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 CDK7P50613 346 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 SF3A3Q12874 501 aaKnown RBP eCLIP4.53□□□□□ -1.68
VPS29-202ENST00000447578 TRIP6Q15654 476 aaKnown RBP4.53□□□□□ -1.68
VPS29-202ENST00000447578 GPR68Q15743 365 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 CCNG2Q16589 344 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 BAK1Q16611 211 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 TSTQ16762 297 aaKnown RBP4.53□□□□□ -1.68
VPS29-202ENST00000447578 KLHL22Q53GT1 634 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 WDR45BQ5MNZ6 344 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 PXDC1Q5TGL8 231 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 BRINP3Q76B58 766 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 R3HCC1LQ7Z5L2 792 aaKnown RBP4.53□□□□□ -1.68
VPS29-202ENST00000447578 OR8H2Q8N162 312 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 EIF3CQ99613 913 aaKnown RBP4.53□□□□□ -1.68
VPS29-202ENST00000447578 TREX2Q9BQ50 279 aaPredicted RBP4.53□□□□□ -1.68
VPS29-202ENST00000447578 C17orf80Q9BSJ5 609 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 MECRQ9BV79 373 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 PDCL3Q9H2J4 239 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 RMI1Q9H9A7 625 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 GLOD4Q9HC38 313 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 TRNAU1APQ9NX07 287 aaKnown RBP4.53□□□□□ -1.68
VPS29-202ENST00000447578 CCNL1Q9UK58 526 aaPredicted RBP4.53□□□□□ -1.68
VPS29-202ENST00000447578 NEO1Q92859 1461 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 MROH2AA6NES4 1674 aa4.53□□□□□ -1.68
VPS29-202ENST00000447578 COL15A1P39059 1388 aa4.53□□□□□ -1.69
VPS29-202ENST00000447578 KDM5AP29375 1690 aaKnown RBP4.52□□□□□ -1.69
VPS29-202ENST00000447578 FAM90A20PA6NIJ5 464 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 SAC3D1A6NKF1 404 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 TMCC2O75069 709 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 CSF1RP07333 972 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 CD19P15391 556 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 RPS6KB1P23443 525 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 TKTP29401 623 aaKnown RBP4.52□□□□□ -1.69
VPS29-202ENST00000447578 CCKBRP32239 447 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 PAFAH1B1P43034 410 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 MTHFSP49914 203 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 PDE6CP51160 858 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 TBRG1Q3YBR2 411 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 TMEM196Q5HYL7 178 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 DEPDC1Q5TB30 811 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 FAM205BPQ63HN1 556 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 DGAT2L7PQ6IED9 249 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 ANO7Q6IWH7 933 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 MSANTD2Q6P1R3 559 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 SYNE3Q6ZMZ3 975 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 CCDC129Q6ZRS4 1044 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 Q6ZWC4 215 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 LRRC8DQ7L1W4 858 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 RASGRP2Q7LDG7 609 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 KRT27Q7Z3Y8 459 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 ARMC8Q8IUR7 673 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 ABRAQ8N0Z2 381 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 NANOGP1Q8N7R0 232 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 ANKRD44Q8N8A2 993 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 NRACQ8N912 160 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 FSIP1Q8NA03 581 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 PRSS3P2Q8NHM4 247 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 ADAMTS15Q8TE58 950 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 SLC22A17Q8WUG5 538 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 OSCP1Q8WVF1 389 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 DAZAP1Q96EP5 407 aaKnown RBP4.52□□□□□ -1.69
VPS29-202ENST00000447578 MCRS1Q96EZ8 462 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 RBM17Q96I25 401 aaKnown RBP4.52□□□□□ -1.69
VPS29-202ENST00000447578 REXO5Q96IC2 774 aaKnown RBP4.52□□□□□ -1.69
VPS29-202ENST00000447578 APOPT1Q96IL0 206 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 RSRC1Q96IZ7 334 aaKnown RBP4.52□□□□□ -1.69
VPS29-202ENST00000447578 WDR24Q96S15 920 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 KRT84Q9NSB2 600 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 TMLHEQ9NVH6 421 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 MTMR4Q9NYA4 1195 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 ZNF580Q9UK33 172 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 GPR34Q9UPC5 381 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 CNPY2Q9Y2B0 182 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 PCDHB7Q9Y5E2 793 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms