RNA–Protein interactions for RNA: ENST00000444878.5

RBM39-216, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 2,124 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-216	ENST00000444878	PSEN1	P49768	467 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	CCDC15	Q0P6D6	951 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	OVGP1	Q12889	678 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	TAF10	Q12962	218 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	BNIP1	Q12981	228 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	ANKRD20A4	Q4UJ75	823 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	RTP2	Q5QGT7	225 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	ARTN	Q5T4W7	220 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	RNF19B	Q6ZMZ0	732 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	TRIM42	Q8IWZ5	723 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	ACMSD	Q8TDX5	336 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	C10orf82	Q8WW14	230 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	MFSD3	Q96ES6	412 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	SCLY	Q96I15	445 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	LRRC37B	Q96QE4	947 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	CPNE1	Q99829	537 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	TMEM175	Q9BSA9	504 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	OLA1	Q9NTK5	396 aa	Known RBP	13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	TANC1	Q9C0D5	1861 aa		13.95	□□□□□ -0.18
RBM39-216	ENST00000444878	FAM237B	A0A1B0GVD1	139 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	TPP1	O14773	563 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	DCTN3	O75935	186 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ANXA9	O76027	345 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	TBX18	O95935	607 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ALDOA	P04075	364 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	DNAJB2	P25686	324 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	PAPOLA	P51003	745 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	SMARCB1	Q12824	385 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	TCTN1	Q2MV58	587 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ANKS3	Q6ZW76	656 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	MIB1	Q86YT6	1006 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	LRRC49	Q8IUZ0	686 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ATP6V0D2	Q8N8Y2	350 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	SPATA22	Q8NHS9	363 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ATP2A3	Q93084	1043 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	DEFB118	Q96PH6	123 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	FCRL5	Q96RD9	977 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	TTPAL	Q9BTX7	342 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	TRIM55	Q9BYV6	548 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	CRISPLD1	Q9H336	500 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ECT2	Q9H8V3	914 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	GLOD4	Q9HC38	313 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	SLC40A1	Q9NP59	571 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	13.94	□□□□□ -0.18	1e-11	■□□□□ 10.9
RBM39-216	ENST00000444878	RBM22	Q9NW64	420 aa	Known RBP eCLIP	13.94	□□□□□ -0.18	3e-7	■■■■■ 39
RBM39-216	ENST00000444878	MARCH2	Q9P0N8	246 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ZCWPW2	A0A1B0GU75	182 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	WASH4P	A8MWX3	477 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	KLF11	O14901	512 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	MT-CYB	P00156	380 aa	Predicted RBP	13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	FOXD4	Q12950	439 aa	Predicted RBP	13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	DUSP4	Q13115	394 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	FRG1	Q14331	258 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	PSMD5	Q16401	504 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ANO4	Q32M45	955 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	MS4A13	Q5J8X5	152 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	C10orf120	Q5SQS8	335 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	GRTP1	Q5TC63	336 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	AFMID	Q63HM1	303 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	TFAP2D	Q7Z6R9	452 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	TMEM173	Q86WV6	379 aa	Predicted RBP	13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	NUDCD3	Q8IVD9	361 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	KLHDC8B	Q8IXV7	354 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ZNF398	Q8TD17	642 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	SPATA17	Q96L03	361 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	MECR	Q9BV79	373 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	ZYG11B	Q9C0D3	744 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	CHRAC1	Q9NRG0	131 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	PLSCR2	Q9NRY7	297 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	DONSON	Q9NYP3	566 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	FNIP2	Q9P278	1114 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	IPO11	Q9UI26	975 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	DCTN4	Q9UJW0	460 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	SOX13	Q9UN79	622 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	MYLK	Q15746	1914 aa		13.94	□□□□□ -0.18
RBM39-216	ENST00000444878	HAPLN1	P10915	354 aa	Predicted RBP	13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	CCL23	P55773	120 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	TRIP4	Q15650	581 aa	Predicted RBP	13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	RASIP1	Q5U651	963 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	ATG16L1	Q676U5	607 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	CRIPAK	Q8N1N5	446 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	LRRC43	Q8N309	656 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	IPMK	Q8NFU5	416 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	E2F7	Q96AV8	911 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	ERP27	Q96DN0	273 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	ZNF419	Q96HQ0	510 aa	Predicted RBP	13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	BTN2A3P	Q96KV6	586 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	PPP1R2P1	Q96PQ5	205 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	TBL1Y	Q9BQ87	522 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	CHKB	Q9Y259	395 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	C2CD2L	O14523	706 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	TBC1D4	O60343	1298 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	GLRA3	O75311	464 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	TGDS	O95455	350 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	TOP3B	O95985	862 aa	Known RBP	13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	HLA-DQB2	P05538	268 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	HMBS	P08397	361 aa		13.93	□□□□□ -0.18
RBM39-216	ENST00000444878	RHOQ	P17081	205 aa		13.93	□□□□□ -0.18

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