RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CIPCQ9C0C6 399 aa16.14■□□□□ 0.17
USP40-206ENST00000443711 BRD8Q9H0E9 1235 aa16.14■□□□□ 0.17
USP40-206ENST00000443711 SAE1Q9UBE0 346 aaPredicted RBP16.14■□□□□ 0.17
USP40-206ENST00000443711 RNF14Q9UBS8 474 aa16.14■□□□□ 0.17
USP40-206ENST00000443711 IPO11Q9UI26 975 aaKnown RBP16.14■□□□□ 0.17
USP40-206ENST00000443711 MYO18AQ92614 2054 aaKnown RBP16.14■□□□□ 0.17
USP40-206ENST00000443711 CXorf51AA0A1B0GTR3 108 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 ZSCAN5CA6NGD5 496 aaPredicted RBP16.13■□□□□ 0.17
USP40-206ENST00000443711 SHISA7A6NL88 538 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 PRRT4C9JH25 899 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 PPP1R12AO14974 1030 aaPredicted RBP16.13■□□□□ 0.17
USP40-206ENST00000443711 ZNF185O15231 689 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 DCXO43602 365 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 ZMPSTE24O75844 475 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 PECAM1P16284 738 aaPredicted RBP16.13■□□□□ 0.17
USP40-206ENST00000443711 CD72P21854 359 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 GARSP41250 739 aaKnown RBP16.13■□□□□ 0.17
USP40-206ENST00000443711 ECT2LQ008S8 904 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 OTUD4Q01804 1114 aaKnown RBP16.13■□□□□ 0.17
USP40-206ENST00000443711 IL10RBQ08334 325 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 SLC20A2Q08357 652 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 SIGLEC14Q08ET2 396 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 XRCC4Q13426 336 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 NOMO1Q15155 1222 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 TMEM215Q68D42 235 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 RETSATQ6NUM9 610 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 CCNYQ8ND76 341 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 CCDC26Q8TAB7 109 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 ACTL9Q8TC94 416 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 TSGA13Q96PP4 275 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 FRMD8P1Q9BZ68 369 aaPredicted RBP16.13■□□□□ 0.17
USP40-206ENST00000443711 SP110Q9HB58 689 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 VPS51Q9UID3 782 aa16.13■□□□□ 0.17
USP40-206ENST00000443711 NDRG2Q9UN36 371 aaKnown RBP16.13■□□□□ 0.17
USP40-206ENST00000443711 KANSL1LA0AUZ9 987 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 K7EQS6 105 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 SNAP91O60641 907 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 PRAMEF11O60813 436 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 URI1O94763 535 aaPredicted RBP16.12■□□□□ 0.17
USP40-206ENST00000443711 MAP3K6O95382 1288 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 EGFP01133 1207 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 DLDP09622 509 aaKnown RBP16.12■□□□□ 0.17
USP40-206ENST00000443711 ALADP13716 330 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 CCNCP24863 283 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 PAFAH1B1P43034 410 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 NUMBP49757 651 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 GEMIN4P57678 1058 aaKnown RBP16.12■□□□□ 0.17
USP40-206ENST00000443711 ZNF33AQ06730 810 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 FBXO43Q4G163 708 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 DGKKQ5KSL6 1271 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 CCDC33Q8N5R6 958 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 HDAC11Q96DB2 347 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 CAPZA3Q96KX2 299 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 OLFM3Q96PB7 478 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 HOMER3Q9NSC5 361 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 SLC25A13Q9UJS0 675 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 PLA2G4CQ9UP65 541 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 ERVW-1Q9UQF0 538 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 STARD13Q9Y3M8 1113 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 ATG2BQ96BY7 2078 aa16.12■□□□□ 0.17
USP40-206ENST00000443711 HACD1B0YJ81 288 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 H7C0C1 242 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 J3KR12 359 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 STK25O00506 426 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 MCF2LO15068 1137 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 MAFKO60675 156 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 SRPRAP08240 638 aaKnown RBP16.11■□□□□ 0.17
USP40-206ENST00000443711 GLDCP23378 1020 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 NNMTP40261 264 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 CTSOP43234 321 aaPredicted RBP16.11■□□□□ 0.17
USP40-206ENST00000443711 ATP5OP48047 213 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 EIF3EP60228 445 aaKnown RBP16.11■□□□□ 0.17
USP40-206ENST00000443711 TUBB2AQ13885 445 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 TIGD7Q6NT04 549 aaPredicted RBP16.11■□□□□ 0.17
USP40-206ENST00000443711 ARHGAP36Q6ZRI8 547 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 ZC3H18Q86VM9 953 aaKnown RBP16.11■□□□□ 0.17
USP40-206ENST00000443711 CREG2Q8IUH2 290 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 SFTPA1Q8IWL2 248 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 KCNV2Q8TDN2 545 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 NSMCE1Q8WV22 266 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 TFB1MQ8WVM0 346 aaKnown RBP16.11■□□□□ 0.17
USP40-206ENST00000443711 SORCS1Q8WY21 1168 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 EZH1Q92800 747 aaPredicted RBP16.11■□□□□ 0.17
USP40-206ENST00000443711 TUBB2BQ9BVA1 445 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 TBC1D17Q9HA65 648 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 LTB4R2Q9NPC1 389 aa16.11■□□□□ 0.17
USP40-206ENST00000443711 R3HDM2Q9Y2K5 976 aaKnown RBP16.11■□□□□ 0.17
USP40-206ENST00000443711 UNC80Q8N2C7 3258 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 FAM170BA6NMN3 283 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 KRIT1O00522 736 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 NPC1O15118 1278 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 ZNF189O75820 626 aaPredicted RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 RBP3P10745 1247 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 HNRNPLP14866 589 aaKnown RBP eCLIP16.1■□□□□ 0.17
USP40-206ENST00000443711 VASPP50552 380 aaPredicted RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 ST8SIA6P61647 398 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 MRPS21P82921 87 aaKnown RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 ARF5P84085 180 aa16.1■□□□□ 0.17
USP40-206ENST00000443711 PPIDQ08752 370 aaKnown RBP16.1■□□□□ 0.17
USP40-206ENST00000443711 AP1B1Q10567 949 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms