RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 CBX4O00257 560 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 NPC1O15118 1278 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 RASA4O43374 803 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 RAMP2O60895 175 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 PALMO75781 387 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 PTMAP06454 111 aaKnown RBP16.4■□□□□ 0.22
USP39-205ENST00000442708 EPHX1P07099 455 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 SRPRAP08240 638 aaKnown RBP16.4■□□□□ 0.22
USP39-205ENST00000442708 VAV1P15498 845 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 ZNF135P52742 658 aaPredicted RBP16.4■□□□□ 0.22
USP39-205ENST00000442708 ARF5P84085 180 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 POLD3Q15054 466 aaPredicted RBP16.4■□□□□ 0.22
USP39-205ENST00000442708 PDK2Q15119 407 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 LEKR1Q6ZMV7 388 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 FRS2Q8WU20 508 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 NELL1Q92832 810 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 FAF2Q96CS3 445 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 C2orf49Q9BVC5 232 aaPredicted RBP16.4■□□□□ 0.22
USP39-205ENST00000442708 CALN1Q9BXU9 219 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 SLC39A8Q9C0K1 460 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 SLC6A17Q9H1V8 727 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 MUC6Q6W4X9 2439 aa16.4■□□□□ 0.22
USP39-205ENST00000442708 TCRBV21S2A2A0A5A6 115 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 LRRD1A4D1F6 860 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 SMAD6O43541 496 aaKnown RBP16.39■□□□□ 0.21
USP39-205ENST00000442708 KRT1P04264 644 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 CCDC175P0C221 793 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 HOXA6P31267 233 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 FNTBP49356 437 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 DGKEP52429 567 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 SULT2A1Q06520 285 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 SERINC3Q13530 473 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 ANKRD20A8PQ5CZ79 823 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 HEATR6Q6AI08 1181 aaKnown RBP16.39■□□□□ 0.21
USP39-205ENST00000442708 IL31Q6EBC2 164 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 SDE2Q6IQ49 451 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 NT5DC3Q86UY8 548 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 PQLC3Q8N755 202 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 MDGA1Q8NFP4 955 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 KIAA1524Q8TCG1 905 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 RNF25Q96BH1 459 aaPredicted RBP16.39■□□□□ 0.21
USP39-205ENST00000442708 CALR3Q96L12 384 aaKnown RBP16.39■□□□□ 0.21
USP39-205ENST00000442708 PPP1R9BQ96SB3 815 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 PRSS16Q9NQE7 514 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 RCOR3Q9P2K3 495 aaPredicted RBP16.39■□□□□ 0.21
USP39-205ENST00000442708 GUCA1BQ9UMX6 200 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 PPP2R2CQ9Y2T4 447 aa16.39■□□□□ 0.21
USP39-205ENST00000442708 PSTPIP1O43586 416 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 KDELR3O43731 214 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 ATP9BO43861 1147 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 APBB3O95704 486 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 SRCP12931 536 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 GABRG2P18507 467 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 VASPP50552 380 aaPredicted RBP16.38■□□□□ 0.21
USP39-205ENST00000442708 PAPOLAP51003 745 aaKnown RBP16.38■□□□□ 0.21
USP39-205ENST00000442708 NDST2P52849 883 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 COPAP53621 1224 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 YBEYP58557 167 aaPredicted RBP16.38■□□□□ 0.21
USP39-205ENST00000442708 CAMK2GQ13555 558 aaPredicted RBP16.38■□□□□ 0.21
USP39-205ENST00000442708 HNRNPA1L2Q32P51 320 aaKnown RBP16.38■□□□□ 0.21
USP39-205ENST00000442708 PARP15Q460N3 678 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 ZFYVE27Q5T4F4 411 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 C9orf64Q5T6V5 341 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 NCBP2-AS2Q69YL0 99 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 ANO7Q6IWH7 933 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 MFSD7Q6UXD7 560 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 ARHGAP36Q6ZRI8 547 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 ZNF662Q6ZS27 426 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 RASSF3Q86WH2 238 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 TXLNBQ8N3L3 684 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 SH2D3CQ8N5H7 860 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 KDM1BQ8NB78 822 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 TSTD1Q8NFU3 115 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 ZNF670Q9BS34 389 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 LZTFL1Q9NQ48 299 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 SLC25A13Q9UJS0 675 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 HS3ST2Q9Y278 367 aa16.38■□□□□ 0.21
USP39-205ENST00000442708 SHROOM3Q8TF72 1996 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 J3KR12 359 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 SIN3BO75182 1162 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 ZNF821O75541 412 aaPredicted RBP16.37■□□□□ 0.21
USP39-205ENST00000442708 FTCDO95954 541 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 NDUFV2P19404 249 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 CTNNA1P35221 906 aaKnown RBP16.37■□□□□ 0.21
USP39-205ENST00000442708 ETFBP38117 255 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 PEX5P50542 639 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 ST8SIA6P61647 398 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 DLG2Q15700 870 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 TAZQ16635 292 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 ZNF528Q3MIS6 628 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 TMCO3Q6UWJ1 677 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 MAP7D3Q8IWC1 876 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 CAMKK1Q8N5S9 505 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 RNF10Q8N5U6 811 aaKnown RBP16.37■□□□□ 0.21
USP39-205ENST00000442708 HMGB4Q8WW32 186 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 ALG3Q92685 438 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 PTPRN2Q92932 1015 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 RNF157Q96PX1 679 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 PRRX2Q99811 253 aa16.37■□□□□ 0.21
USP39-205ENST00000442708 TPSD1Q9BZJ3 242 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms