RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 PTPRN2Q92932 1015 aa19.1■□□□□ 0.65
SHH-204ENST00000441114 RETREG1Q9H6L5 497 aa19.1■□□□□ 0.65
SHH-204ENST00000441114 CHD5Q8TDI0 1954 aa19.1■□□□□ 0.65
SHH-204ENST00000441114 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 IGHV1OR15-9A0A0B4J2B8 117 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 K7ERQ8 282 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 FGF10O15520 208 aaPredicted RBP19.09■□□□□ 0.65
SHH-204ENST00000441114 RHOBTB1O94844 696 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 PROSCO94903 275 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 DNTTP04053 509 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 SRCP12931 536 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 DHPSP49366 369 aaPredicted RBP19.09■□□□□ 0.65
SHH-204ENST00000441114 RPS14P62263 151 aaKnown RBP19.09■□□□□ 0.65
SHH-204ENST00000441114 SPA17Q15506 151 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 BOLA3Q53S33 107 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 LEKR1Q6ZMV7 388 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 ARMCX6Q7L4S7 300 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 FAM124AQ86V42 546 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 TMEFF1Q8IYR6 380 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 CCDC170Q8IYT3 715 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 RUBCNQ92622 972 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 ARHGEF2Q92974 986 aaKnown RBP19.09■□□□□ 0.65
SHH-204ENST00000441114 ZC3H10Q96K80 434 aaKnown RBP19.09■□□□□ 0.65
SHH-204ENST00000441114 MAGEH1Q9H213 219 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 ITM2CQ9NQX7 267 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.09■□□□□ 0.65
SHH-204ENST00000441114 HPCAL4Q9UM19 191 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 TFR2Q9UP52 801 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 ACTL7AQ9Y615 435 aa19.09■□□□□ 0.65
SHH-204ENST00000441114 NUP205Q92621 2012 aa19.08■□□□□ 0.65
SHH-204ENST00000441114 EIF3CLB5ME19 914 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 SMAD6O43541 496 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 ATP9BO43861 1147 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 RNASEH1O60930 286 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 NDUFS2O75306 463 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 ETFBP38117 255 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 TPMTP51580 245 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 RPL6Q02878 288 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 SLC25A11Q02978 314 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 HADHQ16836 314 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 ZNF776Q68DI1 518 aaPredicted RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 RETSATQ6NUM9 610 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 RFX8Q6ZV50 586 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 Q6ZVU0 165 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 LPCAT2Q7L5N7 544 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 C11orf74Q86VG3 221 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 TMTC1Q8IUR5 882 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 PSTKQ8IV42 348 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 MMAAQ8IVH4 418 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 GANCQ8TET4 914 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 FRS2Q8WU20 508 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 EIF3CQ99613 913 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 ACE2Q9BYF1 805 aaPredicted RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 RSPH9Q9H1X1 276 aaPredicted RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 NOL6Q9H6R4 1146 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 FBRSQ9HAH7 460 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 CWC15Q9P013 229 aaKnown RBP19.08■□□□□ 0.64
SHH-204ENST00000441114 IMPACTQ9P2X3 320 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 INTUQ9ULD6 942 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 PCDHA13Q9Y5I0 950 aa19.08■□□□□ 0.64
SHH-204ENST00000441114 WASH4PA8MWX3 477 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 RASA4BC9J798 803 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 H3BRJ5 948 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 RASA4O43374 803 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 ZMPSTE24O75844 475 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 ERCC2P18074 760 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 HTR7P34969 479 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 ARL4AP40617 200 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 NOP2P46087 812 aaKnown RBP19.07■□□□□ 0.64
SHH-204ENST00000441114 PSMD8P48556 350 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 TAS2R40P59535 323 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 ARF5P84085 180 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 KRT81Q14533 505 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 CCDC6Q16204 474 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 ATP13A4Q4VNC1 1196 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 ZFYVE27Q5T4F4 411 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 PMS2CLQ68D20 193 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 SLC36A4Q6YBV0 504 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 METTL3Q86U44 580 aaKnown RBP19.07■□□□□ 0.64
SHH-204ENST00000441114 RHOT2Q8IXI1 618 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 NETO2Q8NC67 525 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 RFFLQ8WZ73 363 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 CELF6Q96J87 481 aaKnown RBP19.07■□□□□ 0.64
SHH-204ENST00000441114 FAM129BQ96TA1 746 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 ARRDC1-AS1Q9H2J1 176 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 TNKS2Q9H2K2 1166 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 USP36Q9P275 1121 aaKnown RBP19.07■□□□□ 0.64
SHH-204ENST00000441114 HS3ST2Q9Y278 367 aa19.07■□□□□ 0.64
SHH-204ENST00000441114 EPN1Q9Y6I3 576 aaPredicted RBP19.07■□□□□ 0.64
SHH-204ENST00000441114 GOLGA6L6A8MZA4 724 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 NDUFA10O95299 355 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 LCA5LO95447 670 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 IL1BP01584 269 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 RETP07949 1114 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 AMPD1P23109 780 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 CD6P30203 668 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 VASPP50552 380 aaPredicted RBP19.06■□□□□ 0.64
SHH-204ENST00000441114 DNA2P51530 1060 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 CDH6P55285 790 aa19.06■□□□□ 0.64
SHH-204ENST00000441114 CREB5Q02930 508 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms