RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 ATP2A3Q93084 1043 aa23.52■■□□□ 1.36
CPSF4-204ENST00000436336 HLA-CQ95604 372 aa23.52■■□□□ 1.36
CPSF4-204ENST00000436336 ASIC4Q96FT7 647 aa23.52■■□□□ 1.36
CPSF4-204ENST00000436336 VAT1Q99536 393 aa23.52■■□□□ 1.36
CPSF4-204ENST00000436336 ACE2Q9BYF1 805 aaPredicted RBP23.52■■□□□ 1.36
CPSF4-204ENST00000436336 TRIM31Q9BZY9 425 aa23.52■■□□□ 1.36
CPSF4-204ENST00000436336 MUC3BQ9H195 1237 aa23.52■■□□□ 1.36
CPSF4-204ENST00000436336 SEPT10Q9P0V9 454 aa23.52■■□□□ 1.36
CPSF4-204ENST00000436336 KIAA1522Q9P206 1035 aaPredicted RBP23.52■■□□□ 1.36
CPSF4-204ENST00000436336 PAK5Q9P286 719 aa23.52■■□□□ 1.36
CPSF4-204ENST00000436336 KCNK1O00180 336 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 RNF103O00237 685 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 ADH1CP00326 375 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 CYP17A1P05093 508 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 MCM3P25205 808 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 RPL22P35268 128 aaKnown RBP23.51■■□□□ 1.35
CPSF4-204ENST00000436336 ADCY8P40145 1251 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 VPS41P49754 854 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 NRLP54845 237 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 WASHC5Q12768 1159 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 ST13P5Q8NFI4 369 aaPredicted RBP23.51■■□□□ 1.35
CPSF4-204ENST00000436336 KXD1Q9BQD3 176 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 PARD6BQ9BYG5 372 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 PLA2G2FQ9BZM2 168 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 DPH5Q9H2P9 285 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 ATP13A1Q9HD20 1204 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 FAM114A2Q9NRY5 505 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 CLEC4EQ9ULY5 219 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 MIA3Q5JRA6 1907 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 C5orf42Q9H799 3197 aa23.51■■□□□ 1.35
CPSF4-204ENST00000436336 A0A0A0MRY4 1105 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 ESYT3A0FGR9 886 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 KDELR3O43731 214 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 PTPN3P26045 913 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 IFI35P80217 286 aaPredicted RBP23.5■■□□□ 1.35
CPSF4-204ENST00000436336 GAD2Q05329 585 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 GPS1Q13098 491 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 SLC12A1Q13621 1099 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 ANKRD20A2Q5SQ80 823 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 ANKRD20A1Q5TYW2 823 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 ANKRD20A3Q5VUR7 823 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 CCDC110Q8TBZ0 833 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 MAML1Q92585 1016 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 LRRC45Q96CN5 670 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 ZFYVE19Q96K21 471 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 SPATA13Q96N96 652 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 FEM1AQ9BSK4 669 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 HPCAL4Q9UM19 191 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 SNX24Q9Y343 169 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 J3KR12 359 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 HOXC11O43248 304 aaPredicted RBP23.5■■□□□ 1.35
CPSF4-204ENST00000436336 PRAMEF11O60813 436 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 OPHN1O60890 802 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 ADH5P11766 374 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 CCNB1P14635 433 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 IVDP26440 423 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 CSKP41240 450 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 RPL21P46778 160 aaKnown RBP23.5■■□□□ 1.35
CPSF4-204ENST00000436336 TEX44Q53QW1 395 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 NSMCE1Q8WV22 266 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 CASKIN2Q8WXE0 1202 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 ALG14Q96F25 216 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 SNF8Q96H20 258 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 SPON2Q9BUD6 331 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 SLC2A11Q9BYW1 496 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 EBF3Q9H4W6 596 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 TRHDEQ9UKU6 1024 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 RAB21Q9UL25 225 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 OR51B4Q9Y5P0 310 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 KIAA1549LQ6ZVL6 1849 aa23.5■■□□□ 1.35
CPSF4-204ENST00000436336 PEX11BO96011 259 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 ARSAP15289 507 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 MZF1P28698 734 aaPredicted RBP23.49■■□□□ 1.35
CPSF4-204ENST00000436336 TNFRSF8P28908 595 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 LMAN2Q12907 356 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 CUL1Q13616 776 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 HNRNPDQ14103 355 aaKnown RBP23.49■■□□□ 1.35
CPSF4-204ENST00000436336 ZNF567Q8N184 647 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 ZNF599Q96NL3 588 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 IL12RB2Q99665 862 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 PDFQ9HBH1 243 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 WHRNQ9P202 907 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 VPS28Q9UK41 221 aa23.49■■□□□ 1.35
CPSF4-204ENST00000436336 COL4A3Q01955 1670 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP23.48■■□□□ 1.35
CPSF4-204ENST00000436336 ANHXE9PGG2 379 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 CHADO15335 359 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 PLK1P53350 603 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 ZBTB17Q13105 803 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 HTR4Q13639 388 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 GRM2Q14416 872 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 TRADDQ15628 312 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 ARHGEF18Q6ZSZ5 1173 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 BBOF1Q8ND07 529 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 LMLNQ96KR4 655 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 XPO6Q96QU8 1125 aaKnown RBP23.48■■□□□ 1.35
CPSF4-204ENST00000436336 CEP41Q9BYV8 373 aa23.48■■□□□ 1.35
CPSF4-204ENST00000436336 KLHL8Q9P2G9 620 aaPredicted RBP23.48■■□□□ 1.35
CPSF4-204ENST00000436336 DNALI1O14645 258 aaPredicted RBP23.47■■□□□ 1.35
CPSF4-204ENST00000436336 NDC80O14777 642 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms