RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 AJAP1Q9UKB5 411 aaPredicted RBP8.33□□□□□ -1.08
VIM-202ENST00000421459 CNTN6Q9UQ52 1028 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 CLCA2Q9UQC9 943 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 OR51B4Q9Y5P0 310 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 HS3ST4Q9Y661 456 aa8.33□□□□□ -1.08
VIM-202ENST00000421459 MGAQ8IWI9 3026 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 A0A1B0GVM2 712 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 A0A1W2PQU0 124 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 TCAF2A6NFQ2 919 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 PYCARD-AS1I3L0S3 204 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 PSMA7O14818 248 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 MCF2LO15068 1137 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 ATXN7O15265 892 aaPredicted RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 YKT6O15498 198 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 RRP8O43159 456 aaKnown RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 SMAD6O43541 496 aaKnown RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 PAGE1O75459 146 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 ADCY5O95622 1261 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 AFPP02771 609 aaKnown RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 MPOP05164 745 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 PNMA6AP0CW24 399 aaPredicted RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 GIMD1P0DJR0 217 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 SRCP12931 536 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 SLC9A1P19634 815 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 RRM1P23921 792 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 ACP1P24666 158 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 GNA15P30679 374 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 NNMTP40261 264 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 USP8P40818 1118 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 PLK1P53350 603 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 CXADRP78310 365 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 CDK17Q00537 523 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 TLE3Q04726 772 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 C19orf57Q0VDD7 668 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 KCNMA1Q12791 1236 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 ALFQ53S48 1182 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 OTUD1Q5VV17 481 aaPredicted RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 SEL1L3Q68CR1 1132 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 OR6B2Q6IFH4 312 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 FAM183BPQ6ZVS7 135 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 BEND5Q7L4P6 421 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 TRIM69Q86WT6 500 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 ERICH1Q86X53 443 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 SPACA3Q8IXA5 215 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 SLC22A18ASQ8N1D0 253 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 ZNF843Q8N446 348 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 SH2D3CQ8N5H7 860 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 OR13H1Q8NG92 308 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 STK32AQ8WU08 396 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 FGF11Q92914 225 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 KLHDC7BQ96G42 594 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 DHTKD1Q96HY7 919 aaPredicted RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 SLC2A13Q96QE2 648 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 MED15Q96RN5 788 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.32□□□□□ -1.08
VIM-202ENST00000421459 SRRTQ9BXP5 876 aaKnown RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 NRSN2Q9GZP1 204 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 TNKS2Q9H2K2 1166 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 THAP9Q9H5L6 903 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 PLCB1Q9NQ66 1216 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 SLC25A13Q9UJS0 675 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 VPS28Q9UK41 221 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 ZFR2Q9UPR6 939 aaKnown RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 ACTL7AQ9Y615 435 aa8.32□□□□□ -1.08
VIM-202ENST00000421459 URB1O60287 2271 aaKnown RBP8.32□□□□□ -1.08
VIM-202ENST00000421459 KNL1Q8NG31 2342 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.31□□□□□ -1.08
VIM-202ENST00000421459 A0A0D9SEW6 157 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 LY6G6EA0A0G2JKS1 128 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 GOLGA6L4A6NEF3 574 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 PRAMEF26H0Y7S4 382 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 KPNA3O00505 521 aaPredicted RBP8.31□□□□□ -1.08
VIM-202ENST00000421459 RAD51BO15315 384 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 P4HA2O15460 535 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 SART1O43290 800 aaKnown RBP8.31□□□□□ -1.08
VIM-202ENST00000421459 MED7O43513 233 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 NEBLO76041 1014 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 ERBB2P04626 1255 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 CCR1P32246 355 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 CHRNA3P32297 505 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 RNASE9P60153 205 aaKnown RBP8.31□□□□□ -1.08
VIM-202ENST00000421459 DAB2P98082 770 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 SULT2A1Q06520 285 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 CETN1Q12798 172 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 ZNF177Q13360 481 aaPredicted RBP8.31□□□□□ -1.08
VIM-202ENST00000421459 ZNF211Q13398 564 aaPredicted RBP8.31□□□□□ -1.08
VIM-202ENST00000421459 STIM1Q13586 685 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 SLC12A1Q13621 1099 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 FGL2Q14314 439 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 ZNF284Q2VY69 593 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 SETMARQ53H47 684 aaPredicted RBP8.31□□□□□ -1.08
VIM-202ENST00000421459 ARSIQ5FYB1 569 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 RABGAP1LQ5R372 815 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 ARTNQ5T4W7 220 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 FAM46CQ5VWP2 391 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 CREBRFQ8IUR6 639 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 OXR1Q8N573 874 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 DCBLD1Q8N8Z6 715 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 ATP11CQ8NB49 1132 aa8.31□□□□□ -1.08
VIM-202ENST00000421459 TMEM145Q8NBT3 493 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms