RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 TK1P04183 234 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 CNPP09543 421 aaKnown RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 GYPEP15421 78 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 CHMP24386 653 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 HOXC8P31273 242 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 ABCD1P33897 745 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 IL13P35225 146 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 IRAK1P51617 712 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TMPRSS3P57727 454 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 POLR2FP61218 127 aaKnown RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 SP3Q02447 781 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 EIF4A2Q14240 407 aaKnown RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 ANKRD1Q15327 319 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 MRNIPQ6NTE8 343 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 CASC1Q6TDU7 716 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 MYO3BQ8WXR4 1341 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 USP6NLQ92738 828 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 CYFIP2Q96F07 1278 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 BAG1Q99933 345 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 CLSTN3Q9BQT9 956 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 CRACR2AQ9BSW2 395 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 NDC1Q9BTX1 674 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 MUC13Q9H3R2 512 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 SMARCAD1Q9H4L7 1026 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 GTF3C4Q9UKN8 822 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 ZBTB32Q9Y2Y4 487 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 PLEKHM1Q9Y4G2 1056 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3DA0A087WVF3 549 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3IA0A087WXS9 549 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3EA0A087X179 549 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3KA0A087X1G2 549 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 A0A0B4J203 849 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3BA6NDS4 549 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3FA6NER0 549 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 YDJCA8MPS7 323 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3LB9A6J9 549 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 F5H697 171 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 GTPBP1O00178 669 aaKnown RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 AP4M1O00189 453 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 VILLO15195 856 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 PDE8BO95263 885 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 NTSR2O95665 410 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 OLFM2O95897 454 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 ONECUT2O95948 504 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 ANXA6P08133 673 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3HP0C7X1 549 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 ALOX12P18054 663 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 AGAP20933 346 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 MCM3P25205 808 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 PEX19P40855 299 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 CSHL1Q14406 222 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TYSND1Q2T9J0 566 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 HFEQ30201 348 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3GQ6DHY5 549 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3CQ6IPX1 549 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 ZNF530Q6P9A1 599 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 FIP1L1Q6UN15 594 aaKnown RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 SUSD1Q6UWL2 747 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 ARMC9Q7Z3E5 817 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 MON1AQ86VX9 555 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 APOBEC3FQ8IUX4 373 aaKnown RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 SAMD14Q8IZD0 417 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D3Q8IZP1 549 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 EXOC4Q96A65 974 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 SAT2Q96F10 170 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 INTS4Q96HW7 963 aaKnown RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 LRIG1Q96JA1 1093 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 MOGAT1Q96PD6 335 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 HAPLN3Q96S86 360 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 GAD1Q99259 594 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 CPPED1Q9BRF8 314 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 C17orf80Q9BSJ5 609 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 HDHD5Q9BXW7 423 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 XAB2Q9HCS7 855 aaKnown RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 NRIP3Q9NQ35 241 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 G6PC2Q9NQR9 355 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 DIAPH3Q9NSV4 1193 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 PEMTQ9UBM1 199 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 CHORDC1Q9UHD1 332 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 ANAPC5Q9UJX4 755 aa2.72□□□□□ -1.97
MCF2-204ENST00000414978 EPN1Q9Y6I3 576 aaPredicted RBP2.72□□□□□ -1.97
MCF2-204ENST00000414978 CACNA1FO60840 1977 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 PPIP5K2O43314 1243 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 TNFSF14O43557 240 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 FARP2O94887 1054 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 ARHGEF15O94989 841 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 TUBBP07437 444 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 IL7RP16871 459 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 TTKP33981 857 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 CDK7P50613 346 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 SLC12A2P55011 1212 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 MXRA7P84157 204 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 PLIN5Q00G26 463 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 TMEM115Q12893 351 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 FBXO43Q4G163 708 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ZRANB3Q5FWF4 1079 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 TRAT1Q6PIZ9 186 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 ZNF572Q7Z3I7 529 aaPredicted RBP2.71□□□□□ -1.98
MCF2-204ENST00000414978 CD99L2Q8TCZ2 262 aa2.71□□□□□ -1.98
MCF2-204ENST00000414978 AFAP1L1Q8TED9 768 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms