RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ACKR2O00590 384 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CXCL11O14625 94 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 HAT1O14929 419 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 REM1O75628 298 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 IDO1P14902 403 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 EIF2B2P49770 351 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 IL2P60568 153 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ELF3P78545 371 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 NAA30Q147X3 362 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ZNHIT3Q15649 155 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TMEM63BQ5T3F8 832 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 IRAK1BP1Q5VVH5 260 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TYW3Q6IPR3 259 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 LAYNQ6UX15 382 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ILDR2Q71H61 639 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 DHDDSQ86SQ9 333 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CDH24Q86UP0 819 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CBWD2Q8IUF1 395 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 DENND6AQ8IWF6 608 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SLC30A8Q8IWU4 369 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 MDM1Q8TC05 714 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TCP10LQ8TDR4 215 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 C15orf40Q8WUR7 153 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 RASSF5Q8WWW0 418 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SLC5A5Q92911 643 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SPATA13Q96N96 652 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 LBHD1Q9BQE6 289 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 POLR1EQ9GZS1 481 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 GPN1Q9HCN4 374 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ERGIC3Q9Y282 383 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SLC9A8Q9Y2E8 581 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CCDC182A6NF36 153 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 DGKIO75912 1065 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 FARP2O94887 1054 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ASGR1P07306 291 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 CAPN1P07384 714 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 NOS2P35228 1153 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 CAP2P40123 477 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 EIF5AP63241 154 aaKnown RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ACSM2AQ08AH3 577 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SEC23AQ15436 765 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 RUNDC3AQ59EK9 446 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 HLA-DQA1Q5Y7H0 255 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ACSM2BQ68CK6 577 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF57Q68EA5 555 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 CCDC185Q8N715 623 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 PRMT6Q96LA8 375 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 BTBD9Q96Q07 612 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SEMA6BQ9H3T3 888 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 AGO4Q9HCK5 861 aaKnown RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 CYLDQ9NQC7 956 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ABCC13Q9NSE7 274 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 FAM49BQ9NUQ9 324 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 RAB26Q9ULW5 256 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SIGLEC16A6NMB1 481 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 MYBL2P10244 700 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SLC16A1P53985 500 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 CSHL1Q14406 222 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 PGS1Q32NB8 556 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SPATS1Q496A3 300 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ZC2HC1CQ53FD0 456 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 MFSD4BQ5TF39 518 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SLC27A1Q6PCB7 646 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 TMC7Q7Z402 723 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 FBXW8Q8N3Y1 598 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 TSPAN14Q8NG11 270 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 HM13Q8TCT9 377 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 FAM163AQ96GL9 167 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 RTKNQ9BST9 563 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 CLK4Q9HAZ1 481 aaKnown RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 IL1RL2Q9HB29 575 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 PCDHGB3Q9Y5G1 929 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 MYPNQ86TC9 1320 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SERPINB7O75635 380 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 RGS20O76081 388 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 MYL9P24844 172 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ELK3P41970 407 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 GABRB2P47870 512 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 CPA2P48052 419 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ARHGDIBP52566 201 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ACVR2BQ13705 512 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 STARD3Q14849 445 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 GALNTL6Q49A17 601 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 TCHHL1Q5QJ38 904 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 RIPOR1Q6ZS17 1223 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 USP45Q70EL2 814 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 PHF13Q86YI8 300 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 NATD1Q8N6N6 113 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 FNDC5Q8NAU1 212 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 UBA3Q8TBC4 463 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 METTL6Q8TCB7 284 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 SPPL2AQ8TCT8 520 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 ANKRD49Q8WVL7 239 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 NELL1Q92832 810 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 KLF6Q99612 283 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-203ENST00000409050 RUSC1Q9BVN2 902 aa6.19□□□□□ -1.42
SCN1A-203ENST00000409050 YTHDF1Q9BYJ9 559 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms