RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ART3Q13508 389 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 RBBP7Q16576 425 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 KBTBD12Q3ZCT8 623 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 TTC31Q49AM3 519 aaPredicted RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 OR7D4Q8NG98 312 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 DIS3LQ8TF46 1054 aaKnown RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 NKD2Q969F2 451 aaPredicted RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 LRRC39Q96DD0 335 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 UPF3AQ9H1J1 476 aaKnown RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 FAM96AQ9H5X1 160 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 FGFR1OP2Q9NVK5 253 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 FBXW11Q9UKB1 542 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 ECM29Q5VYK3 1845 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 ZWINTO95229 277 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 SOD2P04179 222 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 PYGBP11216 843 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 SERPINB8P50452 374 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 TPD52P55327 224 aaPredicted RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 WNT3AP56704 352 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 ZNF844Q08AG5 666 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 TTC27Q6P3X3 843 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 CASP10Q92851 521 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 IL22Q9GZX6 179 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 ELAC1Q9H777 363 aaKnown RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 CCSER2Q9H7U1 834 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 GPAMQ9HCL2 828 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 NPHS2Q9NP85 383 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 BCAP29Q9UHQ4 241 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 AGO1Q9UL18 857 aaKnown RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 ACOT9Q9Y305 439 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 HBS1LQ9Y450 684 aaKnown RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 GLRA3O75311 464 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 AVILO75366 819 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 HAUS5O94927 633 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 ITGB1P05556 798 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 ERVK-10P10266 1014 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 HADHAP40939 763 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 PEX5P50542 639 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 CHI3L2Q15782 390 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 TEX44Q53QW1 395 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 AGAP9Q5VTM2 703 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 TXNDC8Q6A555 127 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 NLRP9Q7RTR0 991 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 ADCK2Q7Z695 626 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 KLHDC9Q8NEP7 349 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 OR10T2Q8NGX3 314 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 POF1BQ8WVV4 589 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 KCTD13Q8WZ19 329 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 MTBPQ96DY7 904 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 PIWIL1Q96J94 861 aaKnown RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 TXLNGQ9NUQ3 528 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 UTP6Q9NYH9 597 aaKnown RBP9.26□□□□□ -0.93
LIG4-202ENST00000405925 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.26□□□□□ -0.93
LIG4-202ENST00000405925 GGT7Q9UJ14 662 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 PCDHB9Q9Y5E1 797 aa9.26□□□□□ -0.93
LIG4-202ENST00000405925 PER2O15055 1255 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 ITGB6P18564 788 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 HMOX2P30519 316 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 ZNF132P52740 706 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 CLDN10P78369 228 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 CSHL1Q14406 222 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 RARS2Q5T160 578 aaKnown RBP9.25□□□□□ -0.93
LIG4-202ENST00000405925 TMTC4Q5T4D3 741 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 ACBD5Q5T8D3 534 aaPredicted RBP9.25□□□□□ -0.93
LIG4-202ENST00000405925 NEPROQ6NW34 567 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 ERAP2Q6P179 960 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 LINGO4Q6UY18 593 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 RNF19BQ6ZMZ0 732 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 SPATA21Q7Z572 469 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 E2F7Q96AV8 911 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 CCT8L2Q96SF2 557 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 RAD9AQ99638 391 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 CYP4F12Q9HCS2 524 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 ZFP69BQ9UJL9 534 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 DOLKQ9UPQ8 538 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 POLR2AP24928 1970 aaKnown RBP9.25□□□□□ -0.93
LIG4-202ENST00000405925 ADAMTSL1Q8N6G6 1762 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 A0A1B0GVM2 712 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 TCAF2A6NFQ2 919 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 H3BQF6 201 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 BAG2O95816 211 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 PBLDP30039 288 aaPredicted RBP9.25□□□□□ -0.93
LIG4-202ENST00000405925 SCNN1AP37088 669 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 YBEYP58557 167 aaPredicted RBP9.25□□□□□ -0.93
LIG4-202ENST00000405925 RPS24P62847 133 aaKnown RBP9.25□□□□□ -0.93
LIG4-202ENST00000405925 FBXL19Q6PCT2 694 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 DSG4Q86SJ6 1040 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 TTC7BQ86TV6 843 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 NIPA2Q8N8Q9 360 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 EIF1ADQ8N9N8 165 aaKnown RBP9.25□□□□□ -0.93
LIG4-202ENST00000405925 KLHL23Q8NBE8 558 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 MLPHQ9BV36 600 aaPredicted RBP9.25□□□□□ -0.93
LIG4-202ENST00000405925 GLOD4Q9HC38 313 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 IL23AQ9NPF7 189 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 CDK5RAP2Q96SN8 1893 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 SASH3O75995 380 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 ACADMP11310 421 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 C1QTNF8P60827 252 aa9.25□□□□□ -0.93
LIG4-202ENST00000405925 POLR2LP62875 67 aaKnown RBP9.25□□□□□ -0.93
LIG4-202ENST00000405925 IFI35P80217 286 aaPredicted RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms