RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 V9GYY5 206 aaPredicted RBP14.54□□□□□ -0.08
SKA1-202ENST00000398452 C2orf16Q68DN1 1984 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 TARSL2A2RTX5 802 aaKnown RBP14.53□□□□□ -0.08
SKA1-202ENST00000398452 GPR37L1O60883 481 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 ADH5P11766 374 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 ALADP13716 330 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 ADCY8P40145 1251 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 IRAK1P51617 712 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 FOXK1P85037 733 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 PPIDQ08752 370 aaKnown RBP14.53□□□□□ -0.08
SKA1-202ENST00000398452 SLC10A2Q12908 348 aaPredicted RBP14.53□□□□□ -0.08
SKA1-202ENST00000398452 CALCOCO2Q13137 446 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 SLC12A1Q13621 1099 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 ERCC6LQ2NKX8 1250 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 P3H1Q32P28 736 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 LY6G5CQ5SRR4 150 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 RNF219Q5W0B1 726 aaPredicted RBP14.53□□□□□ -0.08
SKA1-202ENST00000398452 ITPRIPL1Q6GPH6 555 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 TANGO2Q6ICL3 276 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 TTC27Q6P3X3 843 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 ADGRG2Q8IZP9 1017 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 GPR161Q8N6U8 529 aaKnown RBP14.53□□□□□ -0.08
SKA1-202ENST00000398452 FAM71DQ8N9W8 422 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 RUBCNQ92622 972 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 HMCESQ96FZ2 354 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 VAT1Q99536 393 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 LGMNQ99538 433 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 KXD1Q9BQD3 176 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 C2orf49Q9BVC5 232 aaPredicted RBP14.53□□□□□ -0.08
SKA1-202ENST00000398452 TRMT61BQ9BVS5 477 aaKnown RBP14.53□□□□□ -0.08
SKA1-202ENST00000398452 SLC2A11Q9BYW1 496 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 LINC00597Q9H2U6 94 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 PCDH9Q9HC56 1237 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 PAK5Q9P286 719 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 KLHL8Q9P2G9 620 aaPredicted RBP14.53□□□□□ -0.08
SKA1-202ENST00000398452 EPS15L1Q9UBC2 864 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 TBC1D30Q9Y2I9 924 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 DOCK6Q96HP0 2047 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 NOTCH4Q99466 2003 aa14.53□□□□□ -0.08
SKA1-202ENST00000398452 GOLGA6CA6NDK9 693 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 GOLGA6BA6NDN3 693 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 ZSCAN5CA6NGD5 496 aaPredicted RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 DCXO43602 365 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 GOLGA6DP0CG33 693 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 TYRP14679 529 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 SP100P23497 879 aaPredicted RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 VPS41P49754 854 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 SGSHP51688 502 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 GEMIN4P57678 1058 aaKnown RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 LSM11P83369 360 aaKnown RBP eCLIP14.52□□□□□ -0.09
SKA1-202ENST00000398452 SLC7A5Q01650 507 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 GUCY2DQ02846 1103 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 IL10RBQ08334 325 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 PTK6Q13882 451 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 PRKD1Q15139 912 aaPredicted RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 DHCR24Q15392 516 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 TRIP13Q15645 432 aaPredicted RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 SMAD2Q15796 467 aaKnown RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 EML3Q32P44 896 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 PREPLQ4J6C6 727 aaPredicted RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 VITQ6UXI7 678 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 NUDT18Q6ZVK8 323 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 PCGF5Q86SE9 256 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 TMEM25Q86YD3 366 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 ARHGAP12Q8IWW6 846 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 LRRN4CLQ8ND94 238 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 FIBINQ8TAL6 211 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 CSGALNACT1Q8TDX6 532 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 PTCD2Q8WV60 388 aaKnown RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 ARHGEF2Q92974 986 aaKnown RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 EXOC4Q96A65 974 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 MYEOVQ96EZ4 313 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 P2RY11Q96G91 374 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 TSGA13Q96PP4 275 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 ERP44Q9BS26 406 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 PHF7Q9BWX1 381 aaPredicted RBP14.52□□□□□ -0.09
SKA1-202ENST00000398452 TRIM31Q9BZY9 425 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 FAM114A2Q9NRY5 505 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 NDFIP2Q9NV92 336 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 GOLGA6AQ9NYA3 693 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 MARK1Q9P0L2 795 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 PRKAG3Q9UGI9 489 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 MUTYHQ9UIF7 546 aa14.52□□□□□ -0.09
SKA1-202ENST00000398452 HELZP42694 1942 aaKnown RBP14.51□□□□□ -0.09
SKA1-202ENST00000398452 NUP210Q8TEM1 1887 aaPredicted RBP14.51□□□□□ -0.09
SKA1-202ENST00000398452 E7EVH7 732 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 CBX4O00257 560 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 MATN3O15232 486 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 CHADO15335 359 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 PENKP01210 267 aaPredicted RBP14.51□□□□□ -0.09
SKA1-202ENST00000398452 HOXD9P28356 352 aaPredicted RBP14.51□□□□□ -0.09
SKA1-202ENST00000398452 GDI1P31150 447 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 PTGIRP43119 386 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 LMAN1P49257 510 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 RENBPP51606 427 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 MRPS25P82663 173 aaKnown RBP14.51□□□□□ -0.09
SKA1-202ENST00000398452 FCHO2Q0JRZ9 810 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 GPS1Q13098 491 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 GRM2Q14416 872 aa14.51□□□□□ -0.09
SKA1-202ENST00000398452 HLTFQ14527 1009 aaKnown RBP eCLIP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms