RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 FBXL19Q6PCT2 694 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 MMS22LQ6ZRQ5 1243 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 DSG4Q86SJ6 1040 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 PRPF39Q86UA1 669 aaKnown RBP9.04□□□□□ -0.96
CAPN3-208ENST00000397204 SMYD4Q8IYR2 804 aaPredicted RBP9.04□□□□□ -0.96
CAPN3-208ENST00000397204 TBC1D3Q8IZP1 549 aaPredicted RBP9.04□□□□□ -0.96
CAPN3-208ENST00000397204 CFAP52Q8N1V2 620 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 STK40Q8N2I9 435 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 AADATQ8N5Z0 425 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 DQX1Q8TE96 717 aaKnown RBP9.04□□□□□ -0.96
CAPN3-208ENST00000397204 STK32AQ8WU08 396 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 PTPRN2Q92932 1015 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 PRICKLE1Q96MT3 831 aaPredicted RBP9.04□□□□□ -0.96
CAPN3-208ENST00000397204 ZSWIM1Q9BR11 485 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 MIS12Q9H081 205 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 PRORYQ9H606 182 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.04□□□□□ -0.96
CAPN3-208ENST00000397204 SLC12A6Q9UHW9 1150 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 DMTF1Q9Y222 760 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 CEP83Q9Y592 693 aa9.04□□□□□ -0.96
CAPN3-208ENST00000397204 ARID1BQ8NFD5 2236 aaPredicted RBP9.04□□□□□ -0.96
CAPN3-208ENST00000397204 ATMQ13315 3056 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 M0QYV0 167 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 PIK3R2O00459 728 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 CAPN9O14815 690 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 P4HA2O15460 535 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 SLC7A4O43246 635 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 RNGTTO60942 597 aaKnown RBP9.03□□□□□ -0.96
CAPN3-208ENST00000397204 IL1BP01584 269 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 ITPKBP27987 946 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 CTSOP43234 321 aaPredicted RBP9.03□□□□□ -0.96
CAPN3-208ENST00000397204 GPD2P43304 727 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 FMO5P49326 533 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 PLK1P53350 603 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 ADPRHP54922 357 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 E2F1Q01094 437 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 ELAVL3Q14576 367 aaKnown RBP9.03□□□□□ -0.96
CAPN3-208ENST00000397204 STAT4Q14765 748 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 HES3Q5TGS1 186 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 SFMBT2Q5VUG0 894 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 FAM46CQ5VWP2 391 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.03□□□□□ -0.96
CAPN3-208ENST00000397204 APCDD1Q8J025 514 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 LGI2Q8N0V4 545 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 PPM1KQ8N3J5 372 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 MEIOBQ8N635 442 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 PIP4K2CQ8TBX8 421 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 CLEC4CQ8WTT0 213 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 RFFLQ8WZ73 363 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 FGF11Q92914 225 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 FAM131CQ96AQ9 280 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 MYEOVQ96EZ4 313 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 CRELD1Q96HD1 420 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 BTN2A3PQ96KV6 586 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 RPL10LQ96L21 214 aaKnown RBP9.03□□□□□ -0.96
CAPN3-208ENST00000397204 SPAG5Q96R06 1193 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 NUCKS1Q9H1E3 243 aaKnown RBP9.03□□□□□ -0.96
CAPN3-208ENST00000397204 GOLPH3LQ9H4A5 285 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 ST7Q9NRC1 585 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 PGPEP1Q9NXJ5 209 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 ARHGAP20Q9P2F6 1191 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 TJP2Q9UDY2 1190 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 NAALADL1Q9UQQ1 740 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 ZDHHC9Q9Y397 364 aa9.03□□□□□ -0.96
CAPN3-208ENST00000397204 KCNU1A8MYU2 1149 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 CBX4O00257 560 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 ATXN7O15265 892 aaPredicted RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 TLX3O43711 291 aaPredicted RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 SMC2O95347 1197 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 MOCS2O96007 188 aaPredicted RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 APOEP02649 317 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 SLC2A3P11169 496 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 TACR2P21452 398 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 ACP1P24666 158 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 BRD2P25440 801 aaKnown RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 MZF1P28698 734 aaPredicted RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 DRD3P35462 400 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 ACTN2P35609 894 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 PSMD8P48556 350 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 PMS1P54277 932 aaKnown RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 YWHAZP63104 245 aaKnown RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 GCNT1Q02742 428 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 DHX9Q08211 1270 aaKnown RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 CBLBQ13191 982 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 PNOCQ13519 176 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 MEA1Q16626 185 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 ZC3H12AQ5D1E8 599 aaKnown RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 SYPL2Q5VXT5 272 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 RAP1GAP2Q684P5 730 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 KANSL1Q7Z3B3 1105 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 TMEM110Q86TL2 294 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 SPATS2Q86XZ4 545 aaKnown RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 LINC00528Q8N1L1 170 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 ATP6V0D2Q8N8Y2 350 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 LMO3Q8TAP4 145 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 SPATA20Q8TB22 786 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 FRS2Q8WU20 508 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 FAM149B1Q96BN6 582 aa9.02□□□□□ -0.97
CAPN3-208ENST00000397204 DHTKD1Q96HY7 919 aaPredicted RBP9.02□□□□□ -0.97
CAPN3-208ENST00000397204 CEP63Q96MT8 703 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms