RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 TBC1D13Q9NVG8 400 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 PRMT7Q9NVM4 692 aaPredicted RBP12.02□□□□□ -0.49
SYNPO-202ENST00000394243 GNEQ9Y223 722 aaKnown RBP12.02□□□□□ -0.49
SYNPO-202ENST00000394243 ATP10AO60312 1499 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.02□□□□□ -0.49
SYNPO-202ENST00000394243 FAM240BA0A1B0GVZ2 78 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 DHFRP00374 187 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 ABCG1P45844 678 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 ZNF177Q13360 481 aaPredicted RBP12.02□□□□□ -0.49
SYNPO-202ENST00000394243 FAM187BQ17R55 369 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 ILDR2Q71H61 639 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 C12orf4Q9NQ89 552 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 SIK3Q9Y2K2 1263 aa12.02□□□□□ -0.49
SYNPO-202ENST00000394243 TMEM2Q9UHN6 1383 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 A0A087X1B8 175 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 TIPRLO75663 272 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 FADS2O95864 444 aaKnown RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 ECDO95905 644 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 CNPY1Q3B7I2 92 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 LACTB2Q53H82 288 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 OR6J1Q8NGC5 347 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 EFR3BQ9Y2G0 817 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 PRR5-ARHGAP8B1AHC4 643 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 ASS1P00966 412 aaKnown RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 CHKAP35790 457 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 ARHGAP8P85298 464 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 DPYSQ14117 519 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 NT5DC1Q5TFE4 455 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 CLPTM1LQ96KA5 538 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 Q96MT0 163 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 ASB2Q96Q27 587 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 CDHR5Q9HBB8 845 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 PRPF19Q9UMS4 504 aaKnown RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 LRRC7Q96NW7 1537 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 PIAS1O75925 651 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 ENDOD1O94919 500 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 RASA1P20936 1047 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 C6orf183Q5T699 404 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 BHLHB9Q6PI77 547 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 ELMO1Q92556 727 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 MARCH7Q9H992 704 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 DNAAF2Q9NVR5 837 aaKnown RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 RBM22Q9NW64 420 aaKnown RBP eCLIP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 MLXQ9UH92 298 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 SH3BP1Q9Y3L3 701 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 H3BMM5 538 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 OGTO15294 1046 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 TSPAN3O60637 253 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 NUDT17P0C025 328 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 MYL4P12829 197 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 LTKP29376 864 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 GRIA4P48058 902 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 KCTD19Q17RG1 926 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 RFX4Q33E94 735 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 IER5Q5VY09 327 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 GCNT7Q6ZNI0 430 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 C16orf86Q6ZW13 317 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 BAP1Q92560 729 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 PSMD13Q9UNM6 376 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 GPC6Q9Y625 555 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 G3V2T6 193 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 IFRD1O00458 451 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 USP12O75317 370 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 BST2Q10589 180 aaKnown RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 NAB1Q13506 487 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 BTN2A1Q7KYR7 527 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 TMEM110Q86TL2 294 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 DEPDC4Q8N2C3 294 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 MEIOBQ8N635 442 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 PIK3C3Q8NEB9 887 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 GRPEL2Q8TAA5 225 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 SEMA4BQ9NPR2 832 aaPredicted RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 SLC38A7Q9NVC3 462 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 SPACA6W5XKT8 324 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 KPNA6O60684 536 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 ITGALP20701 1170 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 CAPGP40121 348 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 TAF6P49848 677 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 FRMD7Q6ZUT3 714 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 DMRTB1Q96MA1 342 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 PHF12Q96QT6 1004 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 DUSP9Q99956 384 aaKnown RBP12.01□□□□□ -0.49
SYNPO-202ENST00000394243 MECRQ9BV79 373 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 C17orf75Q9HAS0 396 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 PRKAG2Q9UGJ0 569 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 PCYOX1Q9UHG3 505 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 AP3M1Q9Y2T2 418 aa12.01□□□□□ -0.49
SYNPO-202ENST00000394243 FESP07332 822 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 NR3C2P08235 984 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 SLC2A3P11169 496 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 CDK9P50750 372 aaKnown RBP12□□□□□ -0.49
SYNPO-202ENST00000394243 CYP24A1Q07973 514 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 RALGDSQ12967 914 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 STARD3Q14849 445 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 CIDEBQ9UHD4 219 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 RAB26Q9ULW5 256 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 INO80Q9ULG1 1556 aaPredicted RBP12□□□□□ -0.49
SYNPO-202ENST00000394243 METP08581 1390 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 BTN3A1O00481 513 aa12□□□□□ -0.49
SYNPO-202ENST00000394243 CDC40O60508 579 aaKnown RBP eCLIP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms