RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 HOXD10P28358 340 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 VEGFBP49765 207 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 CDKL1Q00532 357 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 CYLC2Q14093 348 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-203ENST00000374877 CCDC153Q494R4 210 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 PRAMEF19Q5SWL8 479 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 OLFML1Q6UWY5 402 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 TSHZ1Q6ZSZ6 1077 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 CYS1Q717R9 158 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 HACE1Q8IYU2 909 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 LILRA2Q8N149 483 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 CATSPER1Q8NEC5 780 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 SREK1Q8WXA9 508 aaKnown RBP11.31□□□□□ -0.6
CCDC40-203ENST00000374877 ARNTL2Q8WYA1 636 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 MARK4Q96L34 752 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 SPATA13Q96N96 652 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 ARHGAP39Q9C0H5 1083 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 RIMS3Q9UJD0 308 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 BARX2Q9UMQ3 279 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-203ENST00000374877 AP4E1Q9UPM8 1137 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 RGSL1A5PLK6 1076 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 ACKR2O00590 384 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 IL18RAPO95256 599 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 CYBAP13498 195 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 FLT3LGP49771 235 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 CPT1AP50416 773 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 NKX3-2P78367 333 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 IRF9Q00978 393 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 MS4A2Q01362 244 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 OLIG2Q13516 323 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 TLK2Q86UE8 772 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 CERS2Q96G23 380 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 CATSPER2Q96P56 530 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 SENP6Q9GZR1 1112 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-203ENST00000374877 AP5M1Q9H0R1 490 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 RBM38Q9H0Z9 239 aaKnown RBP11.31□□□□□ -0.6
CCDC40-203ENST00000374877 C2orf40Q9H1Z8 148 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 SIP14410 1827 aa11.31□□□□□ -0.6
CCDC40-203ENST00000374877 H3BSA7 217 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 GPR25O00155 361 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 LTFP02788 710 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 POLBP06746 335 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 PFKMP08237 780 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 CDK4P11802 303 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 ZFXP17010 805 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 PSMB4P28070 264 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 CCR10P46092 362 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 GALK1P51570 392 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 SLC6A3Q01959 620 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 ART3Q13508 389 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 ZFP1Q6P2D0 407 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 LRRC8BQ6P9F7 803 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 LCLAT1Q6UWP7 414 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 STRA8Q7Z7C7 330 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 CCNYQ8ND76 341 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 FAM156AQ8NDB6 213 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 ADCY4Q8NFM4 1077 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 TMA16Q96EY4 203 aaKnown RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 CSPG4P5Q96PW8 444 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 NT5C1AQ9BXI3 368 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 NUF2Q9BZD4 464 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 ZNF696Q9H7X3 374 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 CYP3A43Q9HB55 503 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 MTMR10Q9NXD2 777 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 GABRQQ9UN88 632 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 A0A096LPK6 155 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 A0A0J9YVX5 310 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 A0A1B0GTW7 788 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 KPNA7A9QM74 516 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 H3BRB1 525 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 RNF103O00237 685 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 DYNC1LI2O43237 492 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 KPNA6O60684 536 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 TRIM13O60858 407 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 STAG3L1P0CL83 205 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 GOT1P17174 413 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 SAT1P21673 171 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 CEACAM7Q14002 265 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 NRF1Q16656 503 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 ZNF423Q2M1K9 1284 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 LSM12Q3MHD2 195 aaKnown RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 PPP1R26Q5T8A7 1209 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 METTL21CQ5VZV1 264 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 TMEM198Q66K66 360 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 TRIM74Q86UV6 250 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 TRIM73Q86UV7 250 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 PYROXD2Q8N2H3 581 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 ZNF669Q96BR6 464 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 AGAP3Q96P47 875 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 ILKAPQ9H0C8 392 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 TUT1Q9H6E5 874 aaKnown RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 PTPRHQ9HD43 1115 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 HESX1Q9UBX0 185 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 BCAP29Q9UHQ4 241 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 DPYSL4O14531 572 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 USP12O75317 370 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 DUSP11O75319 330 aaKnown RBP11.3□□□□□ -0.6
CCDC40-203ENST00000374877 C22orf31O95567 290 aa11.3□□□□□ -0.6
CCDC40-203ENST00000374877 MLNP12872 115 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms