RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PRR23AA6NEV1 266 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 RBAK-RBAKDNI3L0D1 243 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 SMIM22K7EJ46 135 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 BTN3A1O00481 513 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 RECQL4O94761 1208 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 ANXA6P08133 673 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 CYP2A7P20853 494 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 LRPAP1P30533 357 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PIK3CGP48736 1102 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 NEK3P51956 506 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 MARSP56192 900 aaKnown RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 STARD3Q14849 445 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PREPLQ4J6C6 727 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PCID2Q5JVF3 399 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PALB2Q86YC2 1186 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 ZFPM1Q8IX07 1006 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 ZSCAN18Q8TBC5 510 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 P2RX7Q99572 595 aaKnown RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 CEP44Q9C0F1 390 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 LRMDAQ9H2I8 198 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PTGES3LE9PB15 166 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 TPP1O14773 563 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 DARSP14868 501 aaKnown RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 ITGB6P18564 788 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 S100A3P33764 101 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 SERPINH1P50454 418 aaKnown RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 KCNJ2P63252 427 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 TYW3Q6IPR3 259 aaKnown RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 SYTL1Q8IYJ3 562 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 C10orf53Q8N6V4 93 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PCDH20Q8N6Y1 951 aaKnown RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 ITFG1Q8TB96 612 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 LENG9Q96B70 501 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 RNFT2Q96EX2 444 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 OR12D3Q9UGF7 316 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 RPL26L1Q9UNX3 145 aaKnown RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 AP3M1Q9Y2T2 418 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 SNCAIPQ9Y6H5 919 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 HS6ST1O60243 411 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 EIF2B5Q13144 721 aaKnown RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 PIWIL4Q7Z3Z4 852 aaKnown RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 TMEM86AQ8N2M4 240 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 ARRDC4Q8NCT1 418 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 OR52K1Q8NGK4 314 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 TRPM4Q8TD43 1214 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 ALG3Q92685 438 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 SENP8Q96LD8 212 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 PANX3Q96QZ0 392 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 SNRNP25Q9BV90 132 aaKnown RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 CAPN10Q9HC96 672 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 A0A087X1B8 175 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 PNMA8CA0A1B0GUJ8 204 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 DCDC2CA8MYV0 355 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 FAM20BO75063 409 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 WBP4O75554 376 aaKnown RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 GLRA2P23416 452 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 ATP5F1P24539 256 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 PSMB4P28070 264 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 PBLDP30039 288 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 PBX1P40424 430 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 CENPAP49450 140 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 NOMO3P69849 1222 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 IL17AQ16552 155 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 BMT2Q1RMZ1 405 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 FAM228AQ86W67 206 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 HGH1Q9BTY7 390 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 OSBPL10Q9BXB5 764 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 POLR1EQ9GZS1 481 aaKnown RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 ADAM28Q9UKQ2 775 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 DUSP12Q9UNI6 340 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 PLA2G4CQ9UP65 541 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 TNFSF13BQ9Y275 285 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 REXO2Q9Y3B8 237 aaKnown RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 UMODL1Q5DID0 1318 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 PHRF1Q9P1Y6 1649 aaKnown RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 WTIPA6NIX2 430 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 HDAC3O15379 428 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 RECQL5O94762 991 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 MMP13P45452 471 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 ABCG1P45844 678 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 IL2P60568 153 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 SLC25A3Q00325 362 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 TGM3Q08188 693 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 EPS8Q12929 822 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 GLT6D1Q7Z4J2 308 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 IRF2BP1Q8IU81 584 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 STAG3L4Q8TBR4 150 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 PRDM12Q9H4Q4 367 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 SLCO1B3Q9NPD5 702 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 CRYL1Q9Y2S2 319 aa11.6□□□□□ -0.55
PTPRF-203ENST00000372407 TNPO3Q9Y5L0 923 aaKnown RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 GOLGA4Q13439 2230 aaKnown RBP11.6□□□□□ -0.55
PTPRF-203ENST00000372407 ALOX15BO15296 676 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 RNASEH1O60930 286 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 ENTPD5O75356 428 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 NPM3O75607 178 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 TRUB2O95900 331 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 EIF2S1P05198 315 aaKnown RBP11.59□□□□□ -0.55
PTPRF-203ENST00000372407 C4BPBP20851 252 aa11.59□□□□□ -0.55
PTPRF-203ENST00000372407 UBA1P22314 1058 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms