RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 STAMBPL1Q96FJ0 436 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 FCRL2Q96LA5 508 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 PBX4Q9BYU1 374 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 DNMT3LQ9UJW3 386 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 ASB3Q9Y575 518 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 SLC12A8A0AV02 714 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 KCNU1A8MYU2 1149 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 EPHB2P29323 1055 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 RPA3P35244 121 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 GBE1Q04446 702 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 FASTKD3Q14CZ7 662 aaKnown RBP13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 HP1BP3Q5SSJ5 553 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 C4orf33Q8N1A6 199 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 ELMOD1Q8N336 334 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 PSMG2Q969U7 264 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 SAMD11Q96NU1 681 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 MYLK2Q9H1R3 596 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 DONSONQ9NYP3 566 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 NEU3Q9UQ49 428 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 C15orf41Q9Y2V0 281 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 FARP1Q9Y4F1 1045 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 SZT2Q5T011 3432 aa13.47□□□□□ -0.25
SQSTM1-201ENST00000360718 MYO9BQ13459 2157 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 TYROBPO43914 113 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 LRIG2O94898 1065 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 GLUD1P00367 558 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 SRGAP2BP0DMP2 458 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 ERCC2P18074 760 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 SERPINB6P35237 376 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 CLCN4P51793 760 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 NRLP54845 237 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 ERVK-21P61565 698 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 RING1Q06587 406 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 PAFAH1B3Q15102 231 aaKnown RBP13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 ACBD5Q5T8D3 534 aaPredicted RBP13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 RWDD4Q6NW29 188 aaKnown RBP13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 CAPN12Q6ZSI9 719 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 TP53INP2Q8IXH6 220 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 PALM2Q8IXS6 379 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 KREMEN2Q8NCW0 462 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 ZNF398Q8TD17 642 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 SLC22A17Q8WUG5 538 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 TMEM237Q96Q45 408 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 IL21Q9HBE4 155 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 RABGEF1Q9UJ41 708 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 HBS1LQ9Y450 684 aaKnown RBP13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 PCDHA11Q9Y5I1 949 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 RAD54BQ9Y620 910 aa13.46□□□□□ -0.25
SQSTM1-201ENST00000360718 BCLAF3A2AJT9 711 aaKnown RBP13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 C2orf78A6NCI8 922 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 HACD1B0YJ81 288 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 PPP1R12AO14974 1030 aaPredicted RBP13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 HNRNPCL1O60812 293 aaKnown RBP13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 ZNF189O75820 626 aaPredicted RBP13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 C8AP07357 584 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 HMBSP08397 361 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 CLNS1AP54105 237 aaKnown RBP13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 GDF10P55107 478 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 PABPC1LQ4VXU2 614 aaKnown RBP13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 KLHDC10Q6PID8 442 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 ADGRD1Q6QNK2 874 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 UNC45BQ8IWX7 931 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 HS6ST3Q8IZP7 471 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 FAM71DQ8N9W8 422 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 NSMCE1Q8WV22 266 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 ERP27Q96DN0 273 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 BTN2A3PQ96KV6 586 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 C1orf74Q96LT6 269 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 RNF38Q9H0F5 515 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 LRMDAQ9H2I8 198 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 CATSPERBQ9H7T0 1116 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 BATF3Q9NR55 127 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 DTLQ9NZJ0 730 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 L3MBTL1Q9Y468 752 aa13.46□□□□□ -0.26
SQSTM1-201ENST00000360718 DCLK1O15075 740 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 TM9SF1O15321 606 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 FGF10O15520 208 aaPredicted RBP13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 KCNN4O15554 427 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 COCHO43405 550 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 IGLV3-27P01718 113 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 RPSAP08865 295 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 TROVE2P10155 538 aaKnown RBP eCLIP13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 KRT4P19013 534 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 TUBP50607 506 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 CRYMQ14894 314 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 PDK1Q15118 436 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 SLC45A4Q5BKX6 768 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 PIK3R6Q5UE93 754 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 HEATR6Q6AI08 1181 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 LVRNQ6Q4G3 990 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 C3orf62Q6ZUJ4 267 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 ANKMY2Q8IV38 441 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 PDIK1LQ8N165 341 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 NAT8LQ8N9F0 302 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 TFB1MQ8WVM0 346 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 ZNF75CPQ92670 426 aaPredicted RBP13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 ANKRD27Q96NW4 1050 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 LRRC3Q9BY71 257 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 NKX2-4Q9H2Z4 354 aa13.45□□□□□ -0.26
SQSTM1-201ENST00000360718 A0A1W2PPM1 405 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms