RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 LAMC2Q13753 1193 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 ZNF280DQ6N043 979 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 ACAD11Q709F0 780 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 PSTKQ8IV42 348 aaKnown RBP12.37□□□□□ -0.43
CLIP3-201ENST00000360535 DSELQ8IZU8 1212 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 TTC39CQ8N584 583 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 PCDH20Q8N6Y1 951 aaKnown RBP12.37□□□□□ -0.43
CLIP3-201ENST00000360535 ZNF408Q9H9D4 720 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 GTSE1Q9NYZ3 720 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 ZDHHC2Q9UIJ5 367 aa12.37□□□□□ -0.43
CLIP3-201ENST00000360535 SF3B1O75533 1304 aaKnown RBP eCLIP12.37□□□□□ -0.43
CLIP3-201ENST00000360535 G3V2L1 256 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 DFFAO00273 331 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 SPATA31D3P0C874 917 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 FGFR3P22607 806 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 PLK1P53350 603 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 FAM187BQ17R55 369 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 CCDC153Q494R4 210 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 SEL1L3Q68CR1 1132 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 EPGNQ6UW88 154 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 SPATA31D4Q6ZUB0 917 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 DENND6AQ8IWF6 608 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 BHLHE22Q8NFJ8 381 aaPredicted RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 ULBP1Q9BZM6 244 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 SUDS3Q9H7L9 328 aaPredicted RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 USP3Q9Y6I4 520 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 C15orf38-AP3S2A0A0A6YYH1 394 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 NEMP2A6NFY4 417 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 MLNP12872 115 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 HNRNPLP14866 589 aaKnown RBP eCLIP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 LIMK2P53671 638 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 ZBTB17Q13105 803 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 CYTH1Q15438 398 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 NRF1Q16656 503 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 SPANXN3Q5MJ09 141 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 NOL9Q5SY16 702 aaKnown RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 C6orf52Q5T4I8 152 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 WSCD1Q658N2 575 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 SLC27A1Q6PCB7 646 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 ARPINQ7Z6K5 226 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 OSTM1Q86WC4 334 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 ZDHHC17Q8IUH5 632 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 NPWQ8N729 165 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 B3GALNT2Q8NCR0 500 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 IPMKQ8NFU5 416 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 CENPIQ92674 756 aaPredicted RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 DCUN1D1Q96GG9 259 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 GRIP2Q9C0E4 1043 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 DDX18Q9NVP1 670 aaKnown RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 SMIM28A0A1B0GU29 152 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 HACD1B0YJ81 288 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 CSPG5O95196 566 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 MT-CYBP00156 380 aaPredicted RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 IREB2P48200 963 aaKnown RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 HARS2P49590 506 aaKnown RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 MPP1Q00013 466 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 CYLC2Q14093 348 aaPredicted RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 SEPT6Q14141 434 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 TLR1Q15399 786 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 PGM2L1Q6PCE3 622 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 TMC7Q7Z402 723 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 KYQ8NBH2 561 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 LENG1Q96BZ8 264 aaPredicted RBP12.36□□□□□ -0.43
CLIP3-201ENST00000360535 SNX27Q96L92 541 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 ZFP42Q96MM3 310 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 FTHL17Q9BXU8 183 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 RHOBTB2Q9BYZ6 727 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 STAP1Q9ULZ2 295 aa12.36□□□□□ -0.43
CLIP3-201ENST00000360535 YJEFN3A6XGL0 299 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 VAPBO95292 243 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 TSPAN8P19075 237 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 HDCP19113 662 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 TFEBP19484 476 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 SOX11P35716 441 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 MS4A2Q01362 244 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 PAN2Q504Q3 1202 aaKnown RBP12.35□□□□□ -0.43
CLIP3-201ENST00000360535 STRADAQ7RTN6 431 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 DNAJB3Q8WWF6 145 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 PRPF18Q99633 342 aaKnown RBP12.35□□□□□ -0.43
CLIP3-201ENST00000360535 C16orf70Q9BSU1 422 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 NAT9Q9BTE0 207 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 FAM192AQ9GZU8 254 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 OCEL1Q9H607 264 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 CHN2P52757 468 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 MTTPP55157 894 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 PRAMEF19Q5SWL8 479 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 BNC2Q6ZN30 1099 aaPredicted RBP12.35□□□□□ -0.43
CLIP3-201ENST00000360535 DPP9Q86TI2 863 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 APLFQ8IW19 511 aaPredicted RBP12.35□□□□□ -0.43
CLIP3-201ENST00000360535 PQLC1Q8N2U9 271 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 OPTNQ96CV9 577 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 NFKBIZQ9BYH8 718 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 CHST12Q9NRB3 414 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 SLC4A7Q9Y6M7 1214 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 ZCWPW2A0A1B0GU75 182 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 H3BNX3 289 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 THRAP10827 490 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 ACADSBP45954 432 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 TAF6P49848 677 aa12.35□□□□□ -0.43
CLIP3-201ENST00000360535 RPL14P50914 215 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms